These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. ASimulatoR: splice-aware RNA-Seq data simulation. Manz Q; Tsoy O; Fenn A; Baumbach J; Völker U; List M; Kacprowski T Bioinformatics; 2021 Sep; 37(18):3008-3010. PubMed ID: 33647976 [TBL] [Abstract][Full Text] [Related]
5. ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis. Wang A; Yan X; Wei Z Bioinformatics; 2018 Sep; 34(18):3238-3240. PubMed ID: 29718132 [TBL] [Abstract][Full Text] [Related]
6. BooleSim: an interactive Boolean network simulator. Bock M; Scharp T; Talnikar C; Klipp E Bioinformatics; 2014 Jan; 30(1):131-2. PubMed ID: 24078712 [TBL] [Abstract][Full Text] [Related]
8. StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks. Aguilera-Mendoza L; Ayala-Ruano S; Martinez-Rios F; Chavez E; García-Jacas CR; Brizuela CA; Marrero-Ponce Y Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37603724 [TBL] [Abstract][Full Text] [Related]
9. Icolos: a workflow manager for structure-based post-processing of de novo generated small molecules. Moore JH; Bauer MR; Guo J; Patronov A; Engkvist O; Margreitter C Bioinformatics; 2022 Oct; 38(21):4951-4952. PubMed ID: 36073898 [TBL] [Abstract][Full Text] [Related]
10. New open-source software for gamma-ray spectra analysis. El Amri L; Chetaine A; Amsil H; El Mokhtari B; Bounouira H; Didi A; Benchrif A; Laraki K; Marah H Appl Radiat Isot; 2022 Jul; 185():110227. PubMed ID: 35489207 [TBL] [Abstract][Full Text] [Related]
11. libRoadRunner 2.0: a high performance SBML simulation and analysis library. Welsh C; Xu J; Smith L; König M; Choi K; Sauro HM Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36478036 [TBL] [Abstract][Full Text] [Related]
12. PrInCE: an R/Bioconductor package for protein-protein interaction network inference from co-fractionation mass spectrometry data. Skinnider MA; Cai C; Stacey RG; Foster LJ Bioinformatics; 2021 Sep; 37(17):2775-2777. PubMed ID: 33471077 [TBL] [Abstract][Full Text] [Related]
16. FreeFlux: A Python Package for Time-Efficient Isotopically Nonstationary Metabolic Flux Analysis. Wu C; Guarnieri M; Xiong W ACS Synth Biol; 2023 Sep; 12(9):2707-2714. PubMed ID: 37561998 [No Abstract] [Full Text] [Related]
17. screenwerk: a modular tool for the design and analysis of drug combination screens. Hanes R; Ayuda-Durán P; Rønneberg L; Nakken S; Hovig E; Zucknick M; Enserink JM Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36573326 [TBL] [Abstract][Full Text] [Related]
18. NGLview-interactive molecular graphics for Jupyter notebooks. Nguyen H; Case DA; Rose AS Bioinformatics; 2018 Apr; 34(7):1241-1242. PubMed ID: 29236954 [TBL] [Abstract][Full Text] [Related]
19. scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data. Faure L; Soldatov R; Kharchenko PV; Adameyko I Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394263 [TBL] [Abstract][Full Text] [Related]
20. microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. Cao Y; Dong Q; Wang D; Zhang P; Liu Y; Niu C Bioinformatics; 2022 Aug; 38(16):4027-4029. PubMed ID: 35771644 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]