168 related articles for article (PubMed ID: 37870450)
1. Genome-wide direct quantification of in vivo mutagenesis using high-accuracy paired-end and complementary consensus sequencing.
You X; Cao Y; Suzuki T; Shao J; Zhu B; Masumura K; Xi J; Liu W; Zhang X; Luan Y
Nucleic Acids Res; 2023 Nov; 51(21):e109. PubMed ID: 37870450
[TBL] [Abstract][Full Text] [Related]
2. Detection of genome-wide low-frequency mutations with Paired-End and Complementary Consensus Sequencing (PECC-Seq) revealed end-repair-derived artifacts as residual errors.
You X; Thiruppathi S; Liu W; Cao Y; Naito M; Furihata C; Honma M; Luan Y; Suzuki T
Arch Toxicol; 2020 Oct; 94(10):3475-3485. PubMed ID: 32737516
[TBL] [Abstract][Full Text] [Related]
3. Detection of in vivo mutagenicity in rat liver samples using error-corrected sequencing techniques.
Izawa K; Tsuda M; Suzuki T; Honma M; Sugiyama KI
Genes Environ; 2023 Nov; 45(1):30. PubMed ID: 37993952
[TBL] [Abstract][Full Text] [Related]
4. Direct quantification of in vivo mutagenesis and carcinogenesis using duplex sequencing.
Valentine CC; Young RR; Fielden MR; Kulkarni R; Williams LN; Li T; Minocherhomji S; Salk JJ
Proc Natl Acad Sci U S A; 2020 Dec; 117(52):33414-33425. PubMed ID: 33318186
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide somatic mutation analysis via Hawk-Seq™ reveals mutation profiles associated with chemical mutagens.
Matsumura S; Sato H; Otsubo Y; Tasaki J; Ikeda N; Morita O
Arch Toxicol; 2019 Sep; 93(9):2689-2701. PubMed ID: 31451845
[TBL] [Abstract][Full Text] [Related]
6. Detection of Low-Frequency Mutations and Identification of Heat-Induced Artifactual Mutations Using Duplex Sequencing.
Ahn EH; Lee SH
Int J Mol Sci; 2019 Jan; 20(1):. PubMed ID: 30625989
[TBL] [Abstract][Full Text] [Related]
7. Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats.
Smith-Roe SL; Hobbs CA; Hull V; Todd Auman J; Recio L; Streicker MA; Rivas MV; Pratt GA; Lo FY; Higgins JE; Schmidt EK; Williams LN; Nachmanson D; Valentine Iii CC; Salk JJ; Witt KL
Mutat Res Genet Toxicol Environ Mutagen; 2023 Oct; 891():503669. PubMed ID: 37770135
[TBL] [Abstract][Full Text] [Related]
8. Application of next-generation sequencing in the detection of low-abundance mutations.
Yang L; Xin-Yue Y; Jin Y
Yi Chuan; 2024 Feb; 46(2):126-139. PubMed ID: 38340003
[TBL] [Abstract][Full Text] [Related]
9. High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq).
Preston JL; Royall AE; Randel MA; Sikkink KL; Phillips PC; Johnson EA
BMC Genomics; 2016 Jun; 17():464. PubMed ID: 27301885
[TBL] [Abstract][Full Text] [Related]
10. Genome-Wide Mutagenesis in Borrelia burgdorferi.
Lin T; Gao L
Methods Mol Biol; 2018; 1690():201-223. PubMed ID: 29032547
[TBL] [Abstract][Full Text] [Related]
11. Characterizing Benzo[a]pyrene-induced lacZ mutation spectrum in transgenic mice using next-generation sequencing.
Beal MA; Gagné R; Williams A; Marchetti F; Yauk CL
BMC Genomics; 2015 Oct; 16():812. PubMed ID: 26481219
[TBL] [Abstract][Full Text] [Related]
12. Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats.
Smith-Roe SL; Hobbs CA; Hull V; Auman JT; Recio L; Streicker MA; Rivas MV; Pratt GA; Lo FY; Higgins JE; Schmidt EK; Williams LN; Nachmanson D; Valentine CC; Salk JJ; Witt KL
bioRxiv; 2023 May; ():. PubMed ID: 37214853
[TBL] [Abstract][Full Text] [Related]
13. Error-corrected next generation sequencing - Promises and challenges for genotoxicity and cancer risk assessment.
Marchetti F; Cardoso R; Chen CL; Douglas GR; Elloway J; Escobar PA; Harper T; Heflich RH; Kidd D; Lynch AM; Myers MB; Parsons BL; Salk JJ; Settivari RS; Smith-Roe SL; Witt KL; Yauk CL; Young R; Zhang S; Minocherhomji S
Mutat Res Rev Mutat Res; 2023; 792():108466. PubMed ID: 37643677
[TBL] [Abstract][Full Text] [Related]
14. Preparation of Transposon Library and Tn-Seq Amplicon Library for Salmonella Typhimurium.
Karash S; Jiang T; Samarth D; Chandrashekar R; Kwon YM
Methods Mol Biol; 2019; 2016():3-15. PubMed ID: 31197704
[TBL] [Abstract][Full Text] [Related]
15. In vivo mutagenesis induced by benzo[a]pyrene instilled into the lung of gpt delta transgenic mice.
Hashimoto AH; Amanuma K; Hiyoshi K; Takano H; Masumura K; Nohmi T; Aoki Y
Environ Mol Mutagen; 2005 May; 45(4):365-73. PubMed ID: 15657916
[TBL] [Abstract][Full Text] [Related]
16. Next-Generation Genotoxicology: Using Modern Sequencing Technologies to Assess Somatic Mutagenesis and Cancer Risk.
Salk JJ; Kennedy SR
Environ Mol Mutagen; 2020 Jan; 61(1):135-151. PubMed ID: 31595553
[TBL] [Abstract][Full Text] [Related]
17. Analyzing somatic mutations by single-cell whole-genome sequencing.
Zhang L; Lee M; Maslov AY; Montagna C; Vijg J; Dong X
Nat Protoc; 2024 Feb; 19(2):487-516. PubMed ID: 37996541
[TBL] [Abstract][Full Text] [Related]
18. Technical advance in targeted NGS analysis enables identification of lung cancer risk-associated low frequency TP53, PIK3CA, and BRAF mutations in airway epithelial cells.
Craig DJ; Morrison T; Khuder SA; Crawford EL; Wu L; Xu J; Blomquist TM; Willey JC
BMC Cancer; 2019 Nov; 19(1):1081. PubMed ID: 31711466
[TBL] [Abstract][Full Text] [Related]
19. Next Generation Sequencing Workshop at the Royal Society of Medicine (London, May 2022): how genomics is on the path to modernizing genetic toxicology.
Lynch AM; Zanoni TB; Salk JJ; Martincorena I; Young RR; Kucab J; Valentine CC; Yauk C; Escobar PA; Witt KL; Frötschl R; Reed SH; Ashford A
Mutagenesis; 2023 Aug; 38(4):192-200. PubMed ID: 37300447
[TBL] [Abstract][Full Text] [Related]
20. PECC: Correcting contigs based on paired-end read distribution.
Li M; Wu B; Yan X; Luo J; Pan Y; Wu FX; Wang J
Comput Biol Chem; 2017 Aug; 69():178-184. PubMed ID: 28545961
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]