165 related articles for article (PubMed ID: 37878789)
1. CoreDetector: a flexible and efficient program for core-genome alignment of evolutionary diverse genomes.
Fruzangohar M; Moolhuijzen P; Bakaj N; Taylor J
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37878789
[TBL] [Abstract][Full Text] [Related]
2. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur S; Guttman DS
BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
[TBL] [Abstract][Full Text] [Related]
3. Screening synteny blocks in pairwise genome comparisons through integer programming.
Tang H; Lyons E; Pedersen B; Schnable JC; Paterson AH; Freeling M
BMC Bioinformatics; 2011 Apr; 12():102. PubMed ID: 21501495
[TBL] [Abstract][Full Text] [Related]
4. Mugsy: fast multiple alignment of closely related whole genomes.
Angiuoli SV; Salzberg SL
Bioinformatics; 2011 Feb; 27(3):334-42. PubMed ID: 21148543
[TBL] [Abstract][Full Text] [Related]
5. seq-seq-pan: building a computational pan-genome data structure on whole genome alignment.
Jandrasits C; Dabrowski PW; Fuchs S; Renard BY
BMC Genomics; 2018 Jan; 19(1):47. PubMed ID: 29334898
[TBL] [Abstract][Full Text] [Related]
6. GenomeVISTA--an integrated software package for whole-genome alignment and visualization.
Poliakov A; Foong J; Brudno M; Dubchak I
Bioinformatics; 2014 Sep; 30(18):2654-5. PubMed ID: 24860159
[TBL] [Abstract][Full Text] [Related]
7. GSAlign: an efficient sequence alignment tool for intra-species genomes.
Lin HN; Hsu WL
BMC Genomics; 2020 Feb; 21(1):182. PubMed ID: 32093618
[TBL] [Abstract][Full Text] [Related]
8. Efficient merging of genome profile alignments.
Hennig A; Nieselt K
Bioinformatics; 2019 Jul; 35(14):i71-i80. PubMed ID: 31510683
[TBL] [Abstract][Full Text] [Related]
9. MUMmer4: A fast and versatile genome alignment system.
Marçais G; Delcher AL; Phillippy AM; Coston R; Salzberg SL; Zimin A
PLoS Comput Biol; 2018 Jan; 14(1):e1005944. PubMed ID: 29373581
[TBL] [Abstract][Full Text] [Related]
10. Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
Kille B; Nute MG; Huang V; Kim E; Phillippy AM; Treangen TJ
Bioinformatics; 2024 May; 40(5):. PubMed ID: 38724243
[TBL] [Abstract][Full Text] [Related]
11. HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching.
Bi G; Mao Y; Xing Q; Cao M
Genomics; 2018 Jan; 110(1):18-22. PubMed ID: 28780378
[TBL] [Abstract][Full Text] [Related]
12. A fast adaptive algorithm for computing whole-genome homology maps.
Jain C; Koren S; Dilthey A; Phillippy AM; Aluru S
Bioinformatics; 2018 Sep; 34(17):i748-i756. PubMed ID: 30423094
[TBL] [Abstract][Full Text] [Related]
13. Aligning the unalignable: bacteriophage whole genome alignments.
Bérard S; Chateau A; Pompidor N; Guertin P; Bergeron A; Swenson KM
BMC Bioinformatics; 2016 Jan; 17():30. PubMed ID: 26757899
[TBL] [Abstract][Full Text] [Related]
14. Multiple whole-genome alignments without a reference organism.
Dubchak I; Poliakov A; Kislyuk A; Brudno M
Genome Res; 2009 Apr; 19(4):682-9. PubMed ID: 19176791
[TBL] [Abstract][Full Text] [Related]
15. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
16. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Treangen TJ; Ondov BD; Koren S; Phillippy AM
Genome Biol; 2014; 15(11):524. PubMed ID: 25410596
[TBL] [Abstract][Full Text] [Related]
17. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
Uchiyama I; Higuchi T; Kobayashi I
BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
[TBL] [Abstract][Full Text] [Related]
18. Cgaln: fast and space-efficient whole-genome alignment.
Nakato R; Gotoh O
BMC Bioinformatics; 2010 Apr; 11():224. PubMed ID: 20433723
[TBL] [Abstract][Full Text] [Related]
19. gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances.
Domazet-Lošo M; Domazet-Lošo T
PLoS One; 2016; 11(11):e0166602. PubMed ID: 27846272
[TBL] [Abstract][Full Text] [Related]
20. ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes.
Moshiri N
Bioinformatics; 2021 May; 37(5):714-716. PubMed ID: 32814953
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
