BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

194 related articles for article (PubMed ID: 37883360)

  • 1. RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples.
    Song K; Elboudwarej E; Zhao X; Zhuo L; Pan D; Liu J; Brachmann C; Patterson SD; Yoon OK; Zavodovskaya M
    PLoS One; 2023; 18(10):e0293400. PubMed ID: 37883360
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Systematic evaluation of RNA quality, microarray data reliability and pathway analysis in fresh, fresh frozen and formalin-fixed paraffin-embedded tissue samples.
    Wimmer I; Tröscher AR; Brunner F; Rubino SJ; Bien CG; Weiner HL; Lassmann H; Bauer J
    Sci Rep; 2018 Apr; 8(1):6351. PubMed ID: 29679021
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.
    Webster AF; Zumbo P; Fostel J; Gandara J; Hester SD; Recio L; Williams A; Wood CE; Yauk CL; Mason CE
    Toxicol Sci; 2015 Dec; 148(2):460-72. PubMed ID: 26361796
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue.
    Jovanović B; Sheng Q; Seitz RS; Lawrence KD; Morris SW; Thomas LR; Hout DR; Schweitzer BL; Guo Y; Pietenpol JA; Lehmann BD
    BMC Cancer; 2017 Apr; 17(1):241. PubMed ID: 28376728
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
    Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L
    PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue.
    Jang JS; Holicky E; Lau J; McDonough S; Mutawe M; Koster MJ; Warrington KJ; Cuninngham JM
    BMC Genomics; 2021 Oct; 22(1):759. PubMed ID: 34689749
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.
    Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
    BMC Cancer; 2019 Dec; 19(1):1189. PubMed ID: 31805884
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
    Zhao W; He X; Hoadley KA; Parker JS; Hayes DN; Perou CM
    BMC Genomics; 2014 Jun; 15(1):419. PubMed ID: 24888378
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A comprehensive assessment of exome capture methods for RNA sequencing of formalin-fixed and paraffin-embedded samples.
    Zong L; Zhu Y; Jiang Y; Xia Y; Liu Q; Jiang S
    BMC Genomics; 2023 Dec; 24(1):777. PubMed ID: 38102591
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessment of stained direct cytology smears of breast cancer for whole transcriptome and targeted messenger RNA sequencing.
    Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
    Cancer Cytopathol; 2023 May; 131(5):289-299. PubMed ID: 36650408
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.
    Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ
    PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257
    [TBL] [Abstract][Full Text] [Related]  

  • 12. mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues.
    Bossel Ben-Moshe N; Gilad S; Perry G; Benjamin S; Balint-Lahat N; Pavlovsky A; Halperin S; Markus B; Yosepovich A; Barshack I; Gal-Yam EN; Domany E; Kaufman B; Dadiani M
    BMC Genomics; 2018 May; 19(1):419. PubMed ID: 29848287
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.
    Jackson AF; Williams A; Moffat I; Phillips SL; Recio L; Waters MD; Lambert IB; Yauk CL
    J Pharmacol Toxicol Methods; 2013; 68(2):260-268. PubMed ID: 23458726
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reproducible and sensitive micro-tissue RNA sequencing from formalin-fixed paraffin-embedded tissues for spatial gene expression analysis.
    Matsunaga H; Arikawa K; Yamazaki M; Wagatsuma R; Ide K; Samuel AZ; Takamochi K; Suzuki K; Hayashi T; Hosokawa M; Kambara H; Takeyama H
    Sci Rep; 2022 Nov; 12(1):19511. PubMed ID: 36376423
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues.
    Kibriya MG; Jasmine F; Roy S; Paul-Brutus RM; Argos M; Ahsan H
    BMC Genomics; 2010 Nov; 11():622. PubMed ID: 21059268
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
    Li P; Conley A; Zhang H; Kim HL
    BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Study on the use of Nanostring nCounter to analyze RNA extracted from formalin-fixed-paraffin-embedded and fresh frozen bladder cancer tissues.
    Zheng CM; Piao XM; Byun YJ; Song SJ; Kim SK; Moon SK; Choi YH; Kang HW; Kim WT; Kim YJ; Lee SC; Kim WJ; Yun SJ
    Cancer Genet; 2022 Nov; 268-269():137-143. PubMed ID: 36368127
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate RNA Sequencing From Formalin-Fixed Cancer Tissue To Represent High-Quality Transcriptome From Frozen Tissue.
    Li J; Fu C; Speed TP; Wang W; Symmans WF
    JCO Precis Oncol; 2018; 2018():. PubMed ID: 29862382
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples.
    Mattesen TB; Andersen CL; Bramsen JB
    Clin Epigenetics; 2021 Jan; 13(1):20. PubMed ID: 33509261
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
    Liu Y; Bhagwate A; Winham SJ; Stephens MT; Harker BW; McDonough SJ; Stallings-Mann ML; Heinzen EP; Vierkant RA; Hoskin TL; Frost MH; Carter JM; Pfrender ME; Littlepage L; Radisky DC; Cunningham JM; Degnim AC; Wang C
    BMC Med Genomics; 2022 Sep; 15(1):195. PubMed ID: 36114500
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.