113 related articles for article (PubMed ID: 37885236)
1. Positional difference and Frequency (PdF) based alignment-free technique for genome sequence comparison.
Dey S; Ghosh P; Das S
J Biomol Struct Dyn; 2023 Oct; ():1-29. PubMed ID: 37885236
[TBL] [Abstract][Full Text] [Related]
2. Biochemical Property Based Positional Matrix: A New Approach Towards Genome Sequence Comparison.
Dey S; Das S; Bhattacharya DK
J Mol Evol; 2023 Feb; 91(1):93-131. PubMed ID: 36587178
[TBL] [Abstract][Full Text] [Related]
3. Positional Correlation Natural Vector: A Novel Method for Genome Comparison.
He L; Dong R; He RL; Yau SS
Int J Mol Sci; 2020 May; 21(11):. PubMed ID: 32485813
[TBL] [Abstract][Full Text] [Related]
4. A new graph-theoretic approach to determine the similarity of genome sequences based on nucleotide triplets.
Das S; Das A; Bhattacharya DK; Tibarewala DN
Genomics; 2020 Nov; 112(6):4701-4714. PubMed ID: 32827671
[TBL] [Abstract][Full Text] [Related]
5. Protein sequence comparison based on representation on a finite dimensional unit hypercube.
Ghosh S; Pal J; Cattani C; Maji B; Bhattacharya DK
J Biomol Struct Dyn; 2024 Aug; 42(12):6425-6439. PubMed ID: 37837426
[TBL] [Abstract][Full Text] [Related]
6. Genome sequence comparison under a new form of tri-nucleotide representation based on bio-chemical properties of nucleotides.
Das S; Das A; Mondal B; Dey N; Bhattacharya DK; Tibarewala DN
Gene; 2020 Mar; 730():144257. PubMed ID: 31759983
[TBL] [Abstract][Full Text] [Related]
7. A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method.
Hatje K; Kollmar M
Front Plant Sci; 2012; 3():192. PubMed ID: 22952468
[TBL] [Abstract][Full Text] [Related]
8. CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model.
Wang T; Yu ZG; Li J
Front Microbiol; 2024; 15():1339156. PubMed ID: 38572227
[TBL] [Abstract][Full Text] [Related]
9. Applying frequency chaos game representation with perceptual image hashing to gene sequence phylogenetic analyses.
Ni H; Mu H; Qi D
J Mol Graph Model; 2021 Sep; 107():107942. PubMed ID: 34058640
[TBL] [Abstract][Full Text] [Related]
10. MMV method: a new approach to compare protein sequences under binary representation.
Pal J; Ghosh S; Maji B; Bhattacharya DK
J Biomol Struct Dyn; 2024 Feb; ():1-7. PubMed ID: 38375605
[TBL] [Abstract][Full Text] [Related]
11. Mapping sequence to feature vector using numerical representation of codons targeted to amino acids for alignment-free sequence analysis.
Das JK; Sengupta A; Choudhury PP; Roy S
Gene; 2021 Jan; 766():145096. PubMed ID: 32919006
[TBL] [Abstract][Full Text] [Related]
12. Phylogenetic tree construction using trinucleotide usage profile (TUP).
Chen S; Deng LY; Bowman D; Shiau JH; Wong TY; Madahian B; Lu HH
BMC Bioinformatics; 2016 Oct; 17(Suppl 13):381. PubMed ID: 27766939
[TBL] [Abstract][Full Text] [Related]
13. A unique approach for protein secondary structure comparison under TOPS representation.
Pal D; Dey S; Ghosh P; Bhattacharya DK; Das S; Maji B
J Biomol Struct Dyn; 2024 May; ():1-13. PubMed ID: 38698728
[TBL] [Abstract][Full Text] [Related]
14. Global comparison of multiple-segmented viruses in 12-dimensional genome space.
Huang HH; Yu C; Zheng H; Hernandez T; Yau SC; He RL; Yang J; Yau SS
Mol Phylogenet Evol; 2014 Dec; 81():29-36. PubMed ID: 25172357
[TBL] [Abstract][Full Text] [Related]
15. Whole genome/proteome based phylogeny reconstruction for prokaryotes using higher order Markov model and chaos game representation.
Yang WF; Yu ZG; Anh V
Mol Phylogenet Evol; 2016 Mar; 96():102-111. PubMed ID: 26724405
[TBL] [Abstract][Full Text] [Related]
16. An improved string composition method for sequence comparison.
Lu G; Zhang S; Fang X
BMC Bioinformatics; 2008 May; 9 Suppl 6(Suppl 6):S15. PubMed ID: 18541050
[TBL] [Abstract][Full Text] [Related]
17. A Novel Real-Time Genome Comparison Method Using Discrete Wavelet Transform.
Huang HH; Girimurugan SB
J Comput Biol; 2018 Apr; 25(4):405-416. PubMed ID: 29272149
[TBL] [Abstract][Full Text] [Related]
18. A novel clustering method via nucleotide-based Fourier power spectrum analysis.
Zhao B; Duan V; Yau SS
J Theor Biol; 2011 Jun; 279(1):83-9. PubMed ID: 21443881
[TBL] [Abstract][Full Text] [Related]
19. Alignment-free genomic sequence comparison using FCGR and signal processing.
Lichtblau D
BMC Bioinformatics; 2019 Dec; 20(1):742. PubMed ID: 31888438
[TBL] [Abstract][Full Text] [Related]
20. An improved model for whole genome phylogenetic analysis by Fourier transform.
Yin C; Yau SS
J Theor Biol; 2015 Oct; 382():99-110. PubMed ID: 26151589
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
