182 related articles for article (PubMed ID: 37889068)
1. High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins.
Martin V; Zhuang F; Zhang Y; Pinheiro K; Gordân R
Nucleic Acids Res; 2023 Nov; 51(21):11600-11612. PubMed ID: 37889068
[TBL] [Abstract][Full Text] [Related]
2. Activation of Mouse
Zhao JY; Osipovich O; Koues OI; Majumder K; Oltz EM
J Immunol; 2017 Aug; 199(3):1131-1141. PubMed ID: 28637900
[TBL] [Abstract][Full Text] [Related]
3. Molecular mechanisms of cooperative binding of transcription factors Runx1-CBFβ-Ets1 on the TCRα gene enhancer.
Kasahara K; Shiina M; Fukuda I; Ogata K; Nakamura H
PLoS One; 2017; 12(2):e0172654. PubMed ID: 28231333
[TBL] [Abstract][Full Text] [Related]
4. A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.
He X; Chen CC; Hong F; Fang F; Sinha S; Ng HH; Zhong S
PLoS One; 2009 Dec; 4(12):e8155. PubMed ID: 19956545
[TBL] [Abstract][Full Text] [Related]
5. A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions.
Shiina M; Hamada K; Inoue-Bungo T; Shimamura M; Uchiyama A; Baba S; Sato K; Yamamoto M; Ogata K
J Mol Biol; 2015 Apr; 427(8):1655-69. PubMed ID: 25083921
[TBL] [Abstract][Full Text] [Related]
6. Identifying cooperative transcription factors in yeast using multiple data sources.
Lai FJ; Jhu MH; Chiu CC; Huang YM; Wu WS
BMC Syst Biol; 2014; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
[TBL] [Abstract][Full Text] [Related]
7. Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.
Kazemian M; Pham H; Wolfe SA; Brodsky MH; Sinha S
Nucleic Acids Res; 2013 Sep; 41(17):8237-52. PubMed ID: 23847101
[TBL] [Abstract][Full Text] [Related]
8. A Role for Autoinhibition in Preventing Dimerization of the Transcription Factor ETS1.
Samorodnitsky D; Szyjka C; Koudelka GB
J Biol Chem; 2015 Sep; 290(36):22101-10. PubMed ID: 26195629
[TBL] [Abstract][Full Text] [Related]
9. DNA specificity determinants associate with distinct transcription factor functions.
Hollenhorst PC; Chandler KJ; Poulsen RL; Johnson WE; Speck NA; Graves BJ
PLoS Genet; 2009 Dec; 5(12):e1000778. PubMed ID: 20019798
[TBL] [Abstract][Full Text] [Related]
10. DNA-dependent formation of transcription factor pairs alters their binding specificity.
Jolma A; Yin Y; Nitta KR; Dave K; Popov A; Taipale M; Enge M; Kivioja T; Morgunova E; Taipale J
Nature; 2015 Nov; 527(7578):384-8. PubMed ID: 26550823
[TBL] [Abstract][Full Text] [Related]
11. Crystallization of the Ets1-Runx1-CBFβ-DNA complex formed on the TCRα gene enhancer.
Shiina M; Hamada K; Inoue-Bungo T; Shimamura M; Baba S; Sato K; Ogata K
Acta Crystallogr F Struct Biol Commun; 2014 Oct; 70(Pt 10):1380-4. PubMed ID: 25286944
[TBL] [Abstract][Full Text] [Related]
12. Quantitative modeling of transcription factor binding specificities using DNA shape.
Zhou T; Shen N; Yang L; Abe N; Horton J; Mann RS; Bussemaker HJ; Gordân R; Rohs R
Proc Natl Acad Sci U S A; 2015 Apr; 112(15):4654-9. PubMed ID: 25775564
[TBL] [Abstract][Full Text] [Related]
13. Structural basis of Ets1 activation by Runx1.
Shrivastava T; Mino K; Babayeva ND; Baranovskaya OI; Rizzino A; Tahirov TH
Leukemia; 2014 Oct; 28(10):2040-8. PubMed ID: 24646888
[TBL] [Abstract][Full Text] [Related]
14. Modeling binding specificities of transcription factor pairs with random forests.
Antikainen AA; Heinonen M; Lähdesmäki H
BMC Bioinformatics; 2022 Jun; 23(1):212. PubMed ID: 35659235
[TBL] [Abstract][Full Text] [Related]
15. Simulations of enhancer evolution provide mechanistic insights into gene regulation.
Duque T; Samee MA; Kazemian M; Pham HN; Brodsky MH; Sinha S
Mol Biol Evol; 2014 Jan; 31(1):184-200. PubMed ID: 24097306
[TBL] [Abstract][Full Text] [Related]
16. Synthetic and genomic regulatory elements reveal aspects of
King DM; Hong CKY; Shepherdson JL; Granas DM; Maricque BB; Cohen BA
Elife; 2020 Feb; 9():. PubMed ID: 32043966
[TBL] [Abstract][Full Text] [Related]
17. Nucleosome-mediated cooperativity between transcription factors.
Mirny LA
Proc Natl Acad Sci U S A; 2010 Dec; 107(52):22534-9. PubMed ID: 21149679
[TBL] [Abstract][Full Text] [Related]
18. Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions.
Ibarra IL; Hollmann NM; Klaus B; Augsten S; Velten B; Hennig J; Zaugg JB
Nat Commun; 2020 Jan; 11(1):124. PubMed ID: 31913281
[TBL] [Abstract][Full Text] [Related]
19. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
20. Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast.
Wu WS; Lai FJ
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S10. PubMed ID: 26679776
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
