These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 37889119)

  • 1. ACR: metagenome-assembled prokaryotic and eukaryotic genome refinement tool.
    Seong HJ; Kim JJ; Sul WJ
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37889119
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 3. binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.
    Hickl O; Queirós P; Wilmes P; May P; Heintz-Buschart A
    Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36239393
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.
    Espinoza JL; Dupont CL
    BMC Bioinformatics; 2022 Oct; 23(1):419. PubMed ID: 36224545
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
    Patin NV; Goodwin KD
    mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
    [TBL] [Abstract][Full Text] [Related]  

  • 6. HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps.
    Du Y; Sun F
    Genome Biol; 2022 Feb; 23(1):63. PubMed ID: 35227283
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics.
    Churcheward B; Millet M; Bihouée A; Fertin G; Chaffron S
    mSystems; 2022 Aug; 7(4):e0043222. PubMed ID: 35703559
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
    Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
    Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample.
    Meziti A; Rodriguez-R LM; Hatt JK; Peña-Gonzalez A; Levy K; Konstantinidis KT
    Appl Environ Microbiol; 2021 Feb; 87(6):. PubMed ID: 33452027
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea.
    Garg SG; Kapust N; Lin W; Knopp M; Tria FDK; Nelson-Sathi S; Gould SB; Fan L; Zhu R; Zhang C; Martin WF
    Genome Biol Evol; 2021 Jan; 13(1):. PubMed ID: 33462601
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses.
    Lui LM; Nielsen TN
    mSystems; 2024 Sep; 9(9):e0024224. PubMed ID: 39158287
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
    Lin HH; Liao YC
    Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
    Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
    Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation.
    Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
    Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35298370
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.
    Maguire F; Jia B; Gray KL; Lau WYV; Beiko RG; Brinkman FSL
    Microb Genom; 2020 Oct; 6(10):. PubMed ID: 33001022
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.
    Qiu Z; Yuan L; Lian CA; Lin B; Chen J; Mu R; Qiao X; Zhang L; Xu Z; Fan L; Zhang Y; Wang S; Li J; Cao H; Li B; Chen B; Song C; Liu Y; Shi L; Tian Y; Ni J; Zhang T; Zhou J; Zhuang WQ; Yu K
    Nat Commun; 2024 Mar; 15(1):2179. PubMed ID: 38467684
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-resolved metagenomics using environmental and clinical samples.
    Kayani MUR; Huang W; Feng R; Chen L
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
    Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
    BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities.
    Zhou Y; Liu M; Yang J
    Microbiol Res; 2022 Jul; 260():127023. PubMed ID: 35430490
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
    Herath D; Tang SL; Tandon K; Ackland D; Halgamuge SK
    BMC Bioinformatics; 2017 Dec; 18(Suppl 16):571. PubMed ID: 29297295
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.