These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 37897355)

  • 1. A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.
    Badaczewska-Dawid AE; Kuriata A; Pintado-Grima C; Garcia-Pardo J; Burdukiewicz M; Iglesias V; Kmiecik S; Ventura S
    Nucleic Acids Res; 2024 Jan; 52(D1):D360-D367. PubMed ID: 37897355
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A3D database: structure-based predictions of protein aggregation for the human proteome.
    Badaczewska-Dawid AE; Garcia-Pardo J; Kuriata A; Pujols J; Ventura S; Kmiecik S
    Bioinformatics; 2022 May; 38(11):3121-3123. PubMed ID: 35445695
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A3DyDB: exploring structural aggregation propensities in the yeast proteome.
    Garcia-Pardo J; Badaczewska-Dawid AE; Pintado-Grima C; Iglesias V; Kuriata A; Kmiecik S; Ventura S
    Microb Cell Fact; 2023 Sep; 22(1):186. PubMed ID: 37716955
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.
    Zambrano R; Jamroz M; Szczasiuk A; Pujols J; Kmiecik S; Ventura S
    Nucleic Acids Res; 2015 Jul; 43(W1):W306-13. PubMed ID: 25883144
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility.
    Kuriata A; Iglesias V; Pujols J; Kurcinski M; Kmiecik S; Ventura S
    Nucleic Acids Res; 2019 Jul; 47(W1):W300-W307. PubMed ID: 31049593
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation.
    Bárcenas O; Kuriata A; Zalewski M; Iglesias V; Pintado-Grima C; Firlik G; Burdukiewicz M; Kmiecik S; Ventura S
    Nucleic Acids Res; 2024 Jul; 52(W1):W170-W175. PubMed ID: 38738618
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A3D 2.0 Update for the Prediction and Optimization of Protein Solubility.
    Pujols J; Iglesias V; Santos J; Kuriata A; Kmiecik S; Ventura S
    Methods Mol Biol; 2022; 2406():65-84. PubMed ID: 35089550
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Aggrescan4D: A comprehensive tool for pH-dependent analysis and engineering of protein aggregation propensity.
    Zalewski M; Iglesias V; Bárcenas O; Ventura S; Kmiecik S
    Protein Sci; 2024 Oct; 33(10):e5180. PubMed ID: 39324697
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Aggrescan3D standalone package for structure-based prediction of protein aggregation properties.
    Kuriata A; Iglesias V; Kurcinski M; Ventura S; Kmiecik S
    Bioinformatics; 2019 Oct; 35(19):3834-3835. PubMed ID: 30825368
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protocols for Rational Design of Protein Solubility and Aggregation Properties Using Aggrescan3D Standalone.
    Kuriata A; Badaczewska-Dawid AE; Pujols J; Ventura S; Kmiecik S
    Methods Mol Biol; 2022; 2340():17-40. PubMed ID: 35167068
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein aggregation profile of the bacterial cytosol.
    de Groot NS; Ventura S
    PLoS One; 2010 Feb; 5(2):e9383. PubMed ID: 20195530
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Proteome-wide subcellular topologies of E. coli polypeptides database (STEPdb).
    Orfanoudaki G; Economou A
    Mol Cell Proteomics; 2014 Dec; 13(12):3674-87. PubMed ID: 25210196
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational prediction of protein aggregation: Advances in proteomics, conformation-specific algorithms and biotechnological applications.
    Santos J; Pujols J; Pallarès I; Iglesias V; Ventura S
    Comput Struct Biotechnol J; 2020; 18():1403-1413. PubMed ID: 32637039
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AGGRESCAN3D: Toward the Prediction of the Aggregation Propensities of Protein Structures.
    Pujols J; Peña-Díaz S; Ventura S
    Methods Mol Biol; 2018; 1762():427-443. PubMed ID: 29594784
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Advanced 3D dynamic culture system with transforming growth factor-β3 enhances production of potent extracellular vesicles with modified protein cargoes via upregulation of TGF-β signaling.
    Min Lim K; Kim S; Yeom J; Choi Y; Lee Y; An J; Gil M; Abdal Dayem A; Kim K; Kang GH; Kim A; Hong K; Kim K; Cho SG
    J Adv Res; 2023 May; 47():57-74. PubMed ID: 36130685
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ProNet DB: a proteome-wise database for protein surface property representations and RNA-binding profiles.
    Wei J; Xiao J; Chen S; Zong L; Gao X; Li Y
    Database (Oxford); 2024 Apr; 2024():. PubMed ID: 38557634
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Aggregation prone regions in human proteome: Insights from large-scale data analyses.
    Prabakaran R; Goel D; Kumar S; Gromiha MM
    Proteins; 2017 Jun; 85(6):1099-1118. PubMed ID: 28257595
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction.
    Ananthasubramanian S; Metri R; Khetan A; Gupta A; Handen A; Chandra N; Ganapathiraju M
    Microb Inform Exp; 2012 Mar; 2():4. PubMed ID: 22587966
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of the aggregation propensity of proteins from the primary sequence: aggregation properties of proteomes.
    Castillo V; Graña-Montes R; Sabate R; Ventura S
    Biotechnol J; 2011 Jun; 6(6):674-85. PubMed ID: 21538897
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.
    Zhou CL; Lam MW; Smith JR; Zemla AT; Dyer MD; Kuczmarski TA; Vitalis EA; Slezak TR
    BMC Bioinformatics; 2006 Oct; 7():459. PubMed ID: 17044936
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.