BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 37914444)

  • 1. Sequencing-based analysis of RNA structures in living cells with 2A3 via SHAPE-MaP.
    Incarnato D
    Methods Enzymol; 2023; 691():153-181. PubMed ID: 37914444
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SHAPE Profiling to Probe Group II Intron Conformational Dynamics During Splicing.
    Wiryaman T; Toor N
    Methods Mol Biol; 2021; 2167():171-182. PubMed ID: 32712920
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy.
    Marinus T; Fessler AB; Ogle CA; Incarnato D
    Nucleic Acids Res; 2021 Apr; 49(6):e34. PubMed ID: 33398343
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.
    Smola MJ; Rice GM; Busan S; Siegfried NA; Weeks KM
    Nat Protoc; 2015 Nov; 10(11):1643-69. PubMed ID: 26426499
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
    Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP
    Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.
    Loughrey D; Watters KE; Settle AH; Lucks JB
    Nucleic Acids Res; 2014 Dec; 42(21):e165. PubMed ID: 25303992
    [TBL] [Abstract][Full Text] [Related]  

  • 7. In-cell RNA structure probing with SHAPE-MaP.
    Smola MJ; Weeks KM
    Nat Protoc; 2018 Jun; 13(6):1181-1195. PubMed ID: 29725122
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
    Watters KE; Lucks JB
    Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn
    Grzywacz K; Chełkowska-Pauszek A; Plucinska-Jankowska M; Żywicki M
    Int J Mol Sci; 2023 Apr; 24(9):. PubMed ID: 37175596
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.
    Poulsen LD; Kielpinski LJ; Salama SR; Krogh A; Vinther J
    RNA; 2015 May; 21(5):1042-52. PubMed ID: 25805860
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Purification and Structural Characterization of the Long Noncoding RNAs.
    Yankey A; Clark SC; Owens MC; Somarowthu S
    Methods Mol Biol; 2021; 2372():93-110. PubMed ID: 34417746
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2.
    Busan S; Weeks KM
    RNA; 2018 Feb; 24(2):143-148. PubMed ID: 29114018
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sequencing and Structure Probing of Long RNAs Using MarathonRT: A Next-Generation Reverse Transcriptase.
    Guo LT; Adams RL; Wan H; Huston NC; Potapova O; Olson S; Gallardo CM; Graveley BR; Torbett BE; Pyle AM
    J Mol Biol; 2020 May; 432(10):3338-3352. PubMed ID: 32259542
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond.
    Gilmer O; Quignon E; Jousset AC; Paillart JC; Marquet R; Vivet-Boudou V
    Viruses; 2021 Sep; 13(10):. PubMed ID: 34696322
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Using SHAPE-MaP to probe small molecule-RNA interactions.
    Martin S; Blankenship C; Rausch JW; Sztuba-Solinska J
    Methods; 2019 Sep; 167():105-116. PubMed ID: 31009771
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA Folding, Mutation, and Detection.
    Klotz KE; Chakrabarti K
    Methods Mol Biol; 2024; 2822():311-334. PubMed ID: 38907926
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).
    Siegfried NA; Busan S; Rice GM; Nelson JA; Weeks KM
    Nat Methods; 2014 Sep; 11(9):959-65. PubMed ID: 25028896
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
    Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
    Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA secondary structure prediction using high-throughput SHAPE.
    Lusvarghi S; Sztuba-Solinska J; Purzycka KJ; Rausch JW; Le Grice SF
    J Vis Exp; 2013 May; (75):e50243. PubMed ID: 23748604
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mapping circular RNA structures in living cells by SHAPE-MaP.
    Guo SK; Nan F; Liu CX; Yang L; Chen LL
    Methods; 2021 Dec; 196():47-55. PubMed ID: 33571668
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.