BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 37939711)

  • 1. MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies.
    Minot SS; Garb B; Roldan A; Tang AS; Oskotsky TT; Rosenthal C; Hoffman NG; Sirota M; Golob JL
    Cell Rep Methods; 2023 Nov; 3(11):100639. PubMed ID: 37939711
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
    Zhu Q; Huang S; Gonzalez A; McGrath I; McDonald D; Haiminen N; Armstrong G; Vázquez-Baeza Y; Yu J; Kuczynski J; Sepich-Poore GD; Swafford AD; Das P; Shaffer JP; Lejzerowicz F; Belda-Ferre P; Havulinna AS; Méric G; Niiranen T; Lahti L; Salomaa V; Kim HC; Jain M; Inouye M; Gilbert JA; Knight R
    mSystems; 2022 Apr; 7(2):e0016722. PubMed ID: 35369727
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
    Zheng Q; Bartow-McKenney C; Meisel JS; Grice EA
    Genome Biol; 2018 Jun; 19(1):82. PubMed ID: 29950165
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
    Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
    Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The feline oral microbiome: a provisional 16S rRNA gene based taxonomy with full-length reference sequences.
    Dewhirst FE; Klein EA; Bennett ML; Croft JM; Harris SJ; Marshall-Jones ZV
    Vet Microbiol; 2015 Feb; 175(2-4):294-303. PubMed ID: 25523504
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
    F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
    Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ordering taxa in image convolution networks improves microbiome-based machine learning accuracy.
    Shtossel O; Isakov H; Turjeman S; Koren O; Louzoun Y
    Gut Microbes; 2023; 15(1):2224474. PubMed ID: 37345233
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Influence of 16S rRNA reference databases in amplicon-based environmental microbiome research.
    Ramakodi MP
    Biotechnol Lett; 2022 Mar; 44(3):523-533. PubMed ID: 35122569
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
    Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
    Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bioinformatic and Statistical Analysis of Microbiome Data.
    Kim Y
    Methods Mol Biol; 2023; 2629():183-229. PubMed ID: 36929079
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis.
    Molano L-AG; Vega-Abellaneda S; Manichanh C
    mSystems; 2024 Feb; 9(2):e0095023. PubMed ID: 38189256
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
    Schloss PD
    mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
    Thorsen J; Brejnrod A; Mortensen M; Rasmussen MA; Stokholm J; Al-Soud WA; Sørensen S; Bisgaard H; Waage J
    Microbiome; 2016 Nov; 4(1):62. PubMed ID: 27884206
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome.
    Salamon D; Zapała B; Krawczyk A; Potasiewicz A; Nikiforuk A; Stój A; Gosiewski T
    Appl Microbiol Biotechnol; 2022 Nov; 106(22):7671-7681. PubMed ID: 36322250
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Microbiome Preprocessing Machine Learning Pipeline.
    Jasner Y; Belogolovski A; Ben-Itzhak M; Koren O; Louzoun Y
    Front Immunol; 2021; 12():677870. PubMed ID: 34220823
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Critical review of 16S rRNA gene sequencing workflow in microbiome studies: From primer selection to advanced data analysis.
    Regueira-Iglesias A; Balsa-Castro C; Blanco-Pintos T; Tomás I
    Mol Oral Microbiol; 2023 Oct; 38(5):347-399. PubMed ID: 37804481
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products.
    Meola M; Rifa E; Shani N; Delbès C; Berthoud H; Chassard C
    BMC Genomics; 2019 Jul; 20(1):560. PubMed ID: 31286860
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Organelle 16S rRNA amplicon sequencing enables profiling of active gut microbiota in murine model.
    Han D; Zhen H; Liu X; Zulewska J; Yang Z
    Appl Microbiol Biotechnol; 2022 Sep; 106(17):5715-5728. PubMed ID: 35896837
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multilocus Sequence Analysis of Phylogroup 1 and 2 Oral Treponeme Strains.
    Huo YB; Chan Y; Lacap-Bugler DC; Mo S; Woo PCY; Leung WK; Watt RM
    Appl Environ Microbiol; 2017 Feb; 83(3):. PubMed ID: 27864174
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.