209 related articles for article (PubMed ID: 37941142)
1. BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.
Höjer P; Frick T; Siga H; Pourbozorgi P; Aghelpasand H; Martin M; Ahmadian A
Nucleic Acids Res; 2023 Dec; 51(22):e114. PubMed ID: 37941142
[TBL] [Abstract][Full Text] [Related]
2. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
Hu Y; Yang C; Zhang L; Zhou X
Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
[TBL] [Abstract][Full Text] [Related]
3. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Wenger AM; Peluso P; Rowell WJ; Chang PC; Hall RJ; Concepcion GT; Ebler J; Fungtammasan A; Kolesnikov A; Olson ND; Töpfer A; Alonge M; Mahmoud M; Qian Y; Chin CS; Phillippy AM; Schatz MC; Myers G; DePristo MA; Ruan J; Marschall T; Sedlazeck FJ; Zook JM; Li H; Koren S; Carroll A; Rank DR; Hunkapiller MW
Nat Biotechnol; 2019 Oct; 37(10):1155-1162. PubMed ID: 31406327
[TBL] [Abstract][Full Text] [Related]
4. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
[TBL] [Abstract][Full Text] [Related]
5. JTK: targeted diploid genome assembler.
Masutani B; Suzuki Y; Suzuki Y; Morishita S
Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37354526
[TBL] [Abstract][Full Text] [Related]
6. Aquila_stLFR: diploid genome assembly based structural variant calling package for stLFR linked-reads.
Liu YH; Grubbs GL; Zhang L; Fang X; Dill DL; Sidow A; Zhou X
Bioinform Adv; 2021; 1(1):vbab007. PubMed ID: 36700103
[TBL] [Abstract][Full Text] [Related]
7. Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
[TBL] [Abstract][Full Text] [Related]
8. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
Wang O; Chin R; Cheng X; Wu MKY; Mao Q; Tang J; Sun Y; Anderson E; Lam HK; Chen D; Zhou Y; Wang L; Fan F; Zou Y; Xie Y; Zhang RY; Drmanac S; Nguyen D; Xu C; Villarosa C; Gablenz S; Barua N; Nguyen S; Tian W; Liu JS; Wang J; Liu X; Qi X; Chen A; Wang H; Dong Y; Zhang W; Alexeev A; Yang H; Wang J; Kristiansen K; Xu X; Drmanac R; Peters BA
Genome Res; 2019 May; 29(5):798-808. PubMed ID: 30940689
[TBL] [Abstract][Full Text] [Related]
9. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
Bansal V
Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
[TBL] [Abstract][Full Text] [Related]
10. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
11. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
12. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
[TBL] [Abstract][Full Text] [Related]
13. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
[TBL] [Abstract][Full Text] [Related]
14. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
[TBL] [Abstract][Full Text] [Related]
15. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
Gigascience; 2022 May; 11():. PubMed ID: 35579550
[TBL] [Abstract][Full Text] [Related]
16. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
[TBL] [Abstract][Full Text] [Related]
17. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
[TBL] [Abstract][Full Text] [Related]
18. Comparison of phasing strategies for whole human genomes.
Choi Y; Chan AP; Kirkness E; Telenti A; Schork NJ
PLoS Genet; 2018 Apr; 14(4):e1007308. PubMed ID: 29621242
[TBL] [Abstract][Full Text] [Related]
19. Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data.
Duan H; Jones AW; Hewitt T; Mackenzie A; Hu Y; Sharp A; Lewis D; Mago R; Upadhyaya NM; Rathjen JP; Stone EA; Schwessinger B; Figueroa M; Dodds PN; Periyannan S; Sperschneider J
Genome Biol; 2022 Mar; 23(1):84. PubMed ID: 35337367
[TBL] [Abstract][Full Text] [Related]
20. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
Li Y; Lin Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
