BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 37945902)

  • 1. Most large structural variants in cancer genomes can be detected without long reads.
    Choo ZN; Behr JM; Deshpande A; Hadi K; Yao X; Tian H; Takai K; Zakusilo G; Rosiene J; Da Cruz Paula A; Weigelt B; Setton J; Riaz N; Powell SN; Busam K; Shoushtari AN; Ariyan C; Reis-Filho J; de Lange T; Imieliński M
    Nat Genet; 2023 Dec; 55(12):2139-2148. PubMed ID: 37945902
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions.
    Sethi R; Becker J; Graaf J; Löwer M; Suchan M; Sahin U; Weber D
    PLoS Comput Biol; 2020 Nov; 16(11):e1008397. PubMed ID: 33226985
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Integrative reconstruction of cancer genome karyotypes using InfoGenomeR.
    Lee Y; Lee H
    Nat Commun; 2021 Apr; 12(1):2467. PubMed ID: 33927198
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterization of structural variants with single molecule and hybrid sequencing approaches.
    Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
    Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
    Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
    BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A decade of structural variants: description, history and methods to detect structural variation.
    Escaramís G; Docampo E; Rabionet R
    Brief Funct Genomics; 2015 Sep; 14(5):305-14. PubMed ID: 25877305
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SvABA: genome-wide detection of structural variants and indels by local assembly.
    Wala JA; Bandopadhayay P; Greenwald NF; O'Rourke R; Sharpe T; Stewart C; Schumacher S; Li Y; Weischenfeldt J; Yao X; Nusbaum C; Campbell P; Getz G; Meyerson M; Zhang CZ; Imielinski M; Beroukhim R
    Genome Res; 2018 Apr; 28(4):581-591. PubMed ID: 29535149
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Next generation mapping reveals novel large genomic rearrangements in prostate cancer.
    Jaratlerdsiri W; Chan EKF; Petersen DC; Yang C; Croucher PI; Bornman MSR; Sheth P; Hayes VM
    Oncotarget; 2017 Apr; 8(14):23588-23602. PubMed ID: 28423598
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Characterizing the Major Structural Variant Alleles of the Human Genome.
    Audano PA; Sulovari A; Graves-Lindsay TA; Cantsilieris S; Sorensen M; Welch AE; Dougherty ML; Nelson BJ; Shah A; Dutcher SK; Warren WC; Magrini V; McGrath SD; Li YI; Wilson RK; Eichler EE
    Cell; 2019 Jan; 176(3):663-675.e19. PubMed ID: 30661756
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A survey of algorithms for the detection of genomic structural variants from long-read sequencing data.
    Ahsan MU; Liu Q; Perdomo JE; Fang L; Wang K
    Nat Methods; 2023 Aug; 20(8):1143-1158. PubMed ID: 37386186
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Toward Recovering Allele-specific Cancer Genome Graphs.
    Rajaraman A; Ma J
    J Comput Biol; 2018 Jul; 25(7):624-636. PubMed ID: 29658776
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
    Gao Y; Ma L; Liu GE
    Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multi-platform discovery of haplotype-resolved structural variation in human genomes.
    Chaisson MJP; Sanders AD; Zhao X; Malhotra A; Porubsky D; Rausch T; Gardner EJ; Rodriguez OL; Guo L; Collins RL; Fan X; Wen J; Handsaker RE; Fairley S; Kronenberg ZN; Kong X; Hormozdiari F; Lee D; Wenger AM; Hastie AR; Antaki D; Anantharaman T; Audano PA; Brand H; Cantsilieris S; Cao H; Cerveira E; Chen C; Chen X; Chin CS; Chong Z; Chuang NT; Lambert CC; Church DM; Clarke L; Farrell A; Flores J; Galeev T; Gorkin DU; Gujral M; Guryev V; Heaton WH; Korlach J; Kumar S; Kwon JY; Lam ET; Lee JE; Lee J; Lee WP; Lee SP; Li S; Marks P; Viaud-Martinez K; Meiers S; Munson KM; Navarro FCP; Nelson BJ; Nodzak C; Noor A; Kyriazopoulou-Panagiotopoulou S; Pang AWC; Qiu Y; Rosanio G; Ryan M; Stütz A; Spierings DCJ; Ward A; Welch AE; Xiao M; Xu W; Zhang C; Zhu Q; Zheng-Bradley X; Lowy E; Yakneen S; McCarroll S; Jun G; Ding L; Koh CL; Ren B; Flicek P; Chen K; Gerstein MB; Kwok PY; Lansdorp PM; Marth GT; Sebat J; Shi X; Bashir A; Ye K; Devine SE; Talkowski ME; Mills RE; Marschall T; Korbel JO; Eichler EE; Lee C
    Nat Commun; 2019 Apr; 10(1):1784. PubMed ID: 30992455
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DELLY: structural variant discovery by integrated paired-end and split-read analysis.
    Rausch T; Zichner T; Schlattl A; Stütz AM; Benes V; Korbel JO
    Bioinformatics; 2012 Sep; 28(18):i333-i339. PubMed ID: 22962449
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective.
    Eaaswarkhanth M; Pavlidis P; Gokcumen O
    Hum Biol; 2014; 86(4):260-75. PubMed ID: 25959693
    [TBL] [Abstract][Full Text] [Related]  

  • 16. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
    Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
    Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Toolkit for automated and rapid discovery of structural variants.
    Soylev A; Kockan C; Hormozdiari F; Alkan C
    Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-wide reconstruction of complex structural variants using read clouds.
    Spies N; Weng Z; Bishara A; McDaniel J; Catoe D; Zook JM; Salit M; West RB; Batzoglou S; Sidow A
    Nat Methods; 2017 Sep; 14(9):915-920. PubMed ID: 28714986
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes.
    Shin G; Greer SU; Xia LC; Lee H; Zhou J; Boles TC; Ji HP
    Nucleic Acids Res; 2019 Nov; 47(19):e115. PubMed ID: 31350896
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Picky comprehensively detects high-resolution structural variants in nanopore long reads.
    Gong L; Wong CH; Cheng WC; Tjong H; Menghi F; Ngan CY; Liu ET; Wei CL
    Nat Methods; 2018 Jun; 15(6):455-460. PubMed ID: 29713081
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.