These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

194 related articles for article (PubMed ID: 37953348)

  • 21. Translational control of apolipoprotein B mRNA: regulation via cis elements in the 5' and 3' untranslated regions.
    Pontrelli L; Sidiropoulos KG; Adeli K
    Biochemistry; 2004 Jun; 43(21):6734-44. PubMed ID: 15157107
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays.
    Davis JE; Insigne KD; Jones EM; Hastings QA; Boldridge WC; Kosuri S
    Cell Syst; 2020 Jul; 11(1):75-85.e7. PubMed ID: 32603702
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Massively Parallel Reporter Assays for High-Throughput In Vivo Analysis of Cis-Regulatory Elements.
    Zheng Y; VanDusen NJ
    J Cardiovasc Dev Dis; 2023 Mar; 10(4):. PubMed ID: 37103023
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Massively parallel cis-regulatory analysis in the mammalian central nervous system.
    Shen SQ; Myers CA; Hughes AE; Byrne LC; Flannery JG; Corbo JC
    Genome Res; 2016 Feb; 26(2):238-55. PubMed ID: 26576614
    [TBL] [Abstract][Full Text] [Related]  

  • 25. lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.
    Gordon MG; Inoue F; Martin B; Schubach M; Agarwal V; Whalen S; Feng S; Zhao J; Ashuach T; Ziffra R; Kreimer A; Georgakopoulos-Soares I; Yosef N; Ye CJ; Pollard KS; Shendure J; Kircher M; Ahituv N
    Nat Protoc; 2020 Aug; 15(8):2387-2412. PubMed ID: 32641802
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A single-cell massively parallel reporter assay detects cell-type-specific gene regulation.
    Zhao S; Hong CKY; Myers CA; Granas DM; White MA; Corbo JC; Cohen BA
    Nat Genet; 2023 Feb; 55(2):346-354. PubMed ID: 36635387
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A systematic analysis of the 3'UTR of HNF4A mRNA reveals an interplay of regulatory elements including miRNA target sites.
    Wirsing A; Senkel S; Klein-Hitpass L; Ryffel GU
    PLoS One; 2011; 6(11):e27438. PubMed ID: 22140441
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.
    Ernst J; Melnikov A; Zhang X; Wang L; Rogov P; Mikkelsen TS; Kellis M
    Nat Biotechnol; 2016 Nov; 34(11):1180-1190. PubMed ID: 27701403
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology.
    Srinivasan C; Phan BN; Lawler AJ; Ramamurthy E; Kleyman M; Brown AR; Kaplow IM; Wirthlin ME; Pfenning AR
    J Neurosci; 2021 Oct; 41(43):9008-9030. PubMed ID: 34462306
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Massively parallel reporter assays in cultured mammalian cells.
    Melnikov A; Zhang X; Rogov P; Wang L; Mikkelsen TS
    J Vis Exp; 2014 Aug; (90):. PubMed ID: 25177895
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Massively parallel reporter assays and variant scoring identified functional variants and target genes for melanoma loci and highlighted cell-type specificity.
    Long E; Yin J; Funderburk KM; Xu M; Feng J; Kane A; Zhang T; Myers T; Golden A; Thakur R; Kong H; Jessop L; Kim EY; Jones K; Chari R; Machiela MJ; Yu K; ; Iles MM; Landi MT; Law MH; Chanock SJ; Brown KM; Choi J
    Am J Hum Genet; 2022 Dec; 109(12):2210-2229. PubMed ID: 36423637
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Massively parallel analysis of human 3' UTRs reveals that AU-rich element length and registration predict mRNA destabilization.
    Siegel DA; Le Tonqueze O; Biton A; Zaitlen N; Erle DJ
    G3 (Bethesda); 2022 Jan; 12(1):. PubMed ID: 34849835
    [TBL] [Abstract][Full Text] [Related]  

  • 33. High-throughput discovery of post-transcriptional cis-regulatory elements.
    Wissink EM; Fogarty EA; Grimson A
    BMC Genomics; 2016 Mar; 17():177. PubMed ID: 26941072
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework.
    Liu J; Ashuach T; Inoue F; Ahituv N; Yosef N; Kreimer A
    Nucleic Acids Res; 2024 Feb; 52(4):1613-1627. PubMed ID: 38296821
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids.
    Capauto D; Wang Y; Wu F; Norton S; Mariani J; Inoue F; Crawford GE; Ahituv N; Abyzov A; Vaccarino FM
    Sci Rep; 2024 Feb; 14(1):3936. PubMed ID: 38365907
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MPRAdecoder: Processing of the Raw MPRA Data With
    Letiagina AE; Omelina ES; Ivankin AV; Pindyurin AV
    Front Genet; 2021; 12():618189. PubMed ID: 34046055
    [TBL] [Abstract][Full Text] [Related]  

  • 37. U-rich elements drive pervasive cryptic splicing in 3' UTR massively parallel reporter assays.
    Dao K; Jungers CF; Djuranovic S; Mustoe AM
    bioRxiv; 2024 Aug; ():. PubMed ID: 39149310
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3' UTR variants.
    Chen JM; Férec C; Cooper DN
    Hum Genet; 2006 Oct; 120(3):301-33. PubMed ID: 16807757
    [TBL] [Abstract][Full Text] [Related]  

  • 39. In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder.
    Jin W; Xia Y; Thela SR; Liu Y; Chen L
    bioRxiv; 2024 Jun; ():. PubMed ID: 38979263
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Genomic annotation of disease-associated variants reveals shared functional contexts.
    Kyono Y; Kitzman JO; Parker SCJ
    Diabetologia; 2019 May; 62(5):735-743. PubMed ID: 30756131
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.