BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

179 related articles for article (PubMed ID: 37953365)

  • 1. MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer.
    Quesnel-Vallières M; Jewell S; Lynch KW; Thomas-Tikhonenko A; Barash Y
    Nucleic Acids Res; 2024 Jan; 52(D1):D213-D221. PubMed ID: 37953365
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RJunBase: a database of RNA splice junctions in human normal and cancerous tissues.
    Li Q; Lai H; Li Y; Chen B; Chen S; Li Y; Huang Z; Meng Z; Wang P; Hu Z; Huang S
    Nucleic Acids Res; 2021 Jan; 49(D1):D201-D211. PubMed ID: 33179749
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.
    Van Moerbeke M; Kasim A; Shkedy Z
    Sci Rep; 2018 May; 8(1):8331. PubMed ID: 29844567
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
    Nellore A; Jaffe AE; Fortin JP; Alquicira-Hernández J; Collado-Torres L; Wang S; Phillips RA; Karbhari N; Hansen KD; Langmead B; Leek JT
    Genome Biol; 2016 Dec; 17(1):266. PubMed ID: 28038678
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.
    Afsari B; Guo T; Considine M; Florea L; Kagohara LT; Stein-O'Brien GL; Kelley D; Flam E; Zambo KD; Ha PK; Geman D; Ochs MF; Califano JA; Gaykalova DA; Favorov AV; Fertig EJ
    Bioinformatics; 2018 Jun; 34(11):1859-1867. PubMed ID: 29342249
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TassDB2 - A comprehensive database of subtle alternative splicing events.
    Sinha R; Lenser T; Jahn N; Gausmann U; Friedel S; Szafranski K; Huse K; Rosenstiel P; Hampe J; Schuster S; Hiller M; Backofen R; Platzer M
    BMC Bioinformatics; 2010 Apr; 11():216. PubMed ID: 20429909
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Variation in alternative splicing across human tissues.
    Yeo G; Holste D; Kreiman G; Burge CB
    Genome Biol; 2004; 5(10):R74. PubMed ID: 15461793
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Observations on novel splice junctions from RNA sequencing data.
    Wang L; Wang X; Wang X; Liang Y; Zhang X
    Biochem Biophys Res Commun; 2011 Jun; 409(2):299-303. PubMed ID: 21575597
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Widespread splicing of repetitive element loci into coding regions of gene transcripts.
    Darby MM; Leek JT; Langmead B; Yolken RH; Sabunciyan S
    Hum Mol Genet; 2016 Nov; 25(22):4962-4982. PubMed ID: 28171598
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
    Denti L; Rizzi R; Beretta S; Vedova GD; Previtali M; Bonizzoni P
    BMC Bioinformatics; 2018 Nov; 19(1):444. PubMed ID: 30458725
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.
    Nguyen Quang N; Goudey S; Ségéral E; Mohammad A; Lemoine S; Blugeon C; Versapuech M; Paillart JC; Berlioz-Torrent C; Emiliani S; Gallois-Montbrun S
    Retrovirology; 2020 Aug; 17(1):25. PubMed ID: 32807178
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Aberrant splicing events caused by insertion of genes of interest into expression vectors.
    Cheng Y; Kang XZ; Chan P; Ye ZW; Chan CP; Jin DY
    Int J Biol Sci; 2022; 18(13):4914-4931. PubMed ID: 35982889
    [No Abstract]   [Full Text] [Related]  

  • 14. RBP-Maps enables robust generation of splicing regulatory maps.
    Yee BA; Pratt GA; Graveley BR; Van Nostrand EL; Yeo GW
    RNA; 2019 Feb; 25(2):193-204. PubMed ID: 30413564
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression.
    Hestand MS; Zeng Z; Coleman SJ; Liu J; MacLeod JN
    PLoS One; 2015; 10(12):e0144302. PubMed ID: 26713731
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.
    Stein S; Lu ZX; Bahrami-Samani E; Park JW; Xing Y
    Nucleic Acids Res; 2015 Dec; 43(22):10612-22. PubMed ID: 26578562
    [TBL] [Abstract][Full Text] [Related]  

  • 17. IntroVerse: a comprehensive database of introns across human tissues.
    García-Ruiz S; Gustavsson EK; Zhang D; Reynolds RH; Chen Z; Fairbrother-Browne A; Gil-Martínez AL; Botia JA; Collado-Torres L; Ryten M
    Nucleic Acids Res; 2023 Jan; 51(D1):D167-D178. PubMed ID: 36399497
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Deep RNA sequencing reveals a high frequency of alternative splicing events in the fungus Trichoderma longibrachiatum.
    Xie BB; Li D; Shi WL; Qin QL; Wang XW; Rong JC; Sun CY; Huang F; Zhang XY; Dong XW; Chen XL; Zhou BC; Zhang YZ; Song XY
    BMC Genomics; 2015 Feb; 16(1):54. PubMed ID: 25652134
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FLIBase: a comprehensive repository of full-length isoforms across human cancers and tissues.
    Shi Q; Li X; Liu Y; Chen Z; He X
    Nucleic Acids Res; 2024 Jan; 52(D1):D124-D133. PubMed ID: 37697439
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
    Li Y; Rao X; Mattox WW; Amos CI; Liu B
    PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.