182 related articles for article (PubMed ID: 37953365)
21. BRIE: transcriptome-wide splicing quantification in single cells.
Huang Y; Sanguinetti G
Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
[TBL] [Abstract][Full Text] [Related]
22. Comprehensive analysis of RNA-binding protein SRSF2-dependent alternative splicing signature in malignant proliferation of colorectal carcinoma.
Liu W; Li D; Lu T; Zhang H; Chen Z; Ruan Q; Zheng Z; Chen L; Guo J
J Biol Chem; 2023 Feb; 299(2):102876. PubMed ID: 36623729
[TBL] [Abstract][Full Text] [Related]
23. SnapShot: Splicing Alterations in Cancer.
Rahman MA; Krainer AR; Abdel-Wahab O
Cell; 2020 Jan; 180(1):208-208.e1. PubMed ID: 31951519
[TBL] [Abstract][Full Text] [Related]
24. SpliceVault predicts the precise nature of variant-associated mis-splicing.
Dawes R; Bournazos AM; Bryen SJ; Bommireddipalli S; Marchant RG; Joshi H; Cooper ST
Nat Genet; 2023 Feb; 55(2):324-332. PubMed ID: 36747048
[TBL] [Abstract][Full Text] [Related]
25. Aberrant splicing prediction across human tissues.
Wagner N; Çelik MH; Hölzlwimmer FR; Mertes C; Prokisch H; Yépez VA; Gagneur J
Nat Genet; 2023 May; 55(5):861-870. PubMed ID: 37142848
[TBL] [Abstract][Full Text] [Related]
26. Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae.
Kawashima T; Douglass S; Gabunilas J; Pellegrini M; Chanfreau GF
PLoS Genet; 2014 Apr; 10(4):e1004249. PubMed ID: 24722551
[TBL] [Abstract][Full Text] [Related]
27. Evolutionarily emerged G tracts between the polypyrimidine tract and 3' AG are splicing silencers enriched in genes involved in cancer.
Sohail M; Cao W; Mahmood N; Myschyshyn M; Hong SP; Xie J
BMC Genomics; 2014 Dec; 15(1):1143. PubMed ID: 25523808
[TBL] [Abstract][Full Text] [Related]
28. SpliceVec: Distributed feature representations for splice junction prediction.
Dutta A; Dubey T; Singh KK; Anand A
Comput Biol Chem; 2018 Jun; 74():434-441. PubMed ID: 29580738
[TBL] [Abstract][Full Text] [Related]
29. Recursive splicing discovery using lariats in total RNA sequencing.
Hoppe ER; Udy DB; Bradley RK
Life Sci Alliance; 2023 Jul; 6(7):. PubMed ID: 37137707
[TBL] [Abstract][Full Text] [Related]
30. Mapping RNA splicing variations in clinically accessible and nonaccessible tissues to facilitate Mendelian disease diagnosis using RNA-seq.
Aicher JK; Jewell P; Vaquero-Garcia J; Barash Y; Bhoj EJ
Genet Med; 2020 Jul; 22(7):1181-1190. PubMed ID: 32225167
[TBL] [Abstract][Full Text] [Related]
31. Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.
Tilgner H; Jahanbani F; Gupta I; Collier P; Wei E; Rasmussen M; Snyder M
Genome Res; 2018 Feb; 28(2):231-242. PubMed ID: 29196558
[TBL] [Abstract][Full Text] [Related]
32. Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq.
Hartley SW; Mullikin JC
Nucleic Acids Res; 2016 Sep; 44(15):e127. PubMed ID: 27257077
[TBL] [Abstract][Full Text] [Related]
33. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
[TBL] [Abstract][Full Text] [Related]
34. Identification of novel alternative splicing isoform biomarkers and their association with overall survival in colorectal cancer.
Lian H; Wang A; Shen Y; Wang Q; Zhou Z; Zhang R; Li K; Liu C; Jia H
BMC Gastroenterol; 2020 Jun; 20(1):171. PubMed ID: 32503434
[TBL] [Abstract][Full Text] [Related]
35. Subcutaneous adipose tissue splice quantitative trait loci reveal differences in isoform usage associated with cardiometabolic traits.
Brotman SM; Raulerson CK; Vadlamudi S; Currin KW; Shen Q; Parsons VA; Iyengar AK; Roman TS; Furey TS; Kuusisto J; Collins FS; Boehnke M; Laakso M; Pajukanta P; Mohlke KL
Am J Hum Genet; 2022 Jan; 109(1):66-80. PubMed ID: 34995504
[TBL] [Abstract][Full Text] [Related]
36. Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq.
Zhang F; Deng CK; Wang M; Deng B; Barber R; Huang G
BMC Bioinformatics; 2020 Dec; 21(Suppl 9):541. PubMed ID: 33272210
[TBL] [Abstract][Full Text] [Related]
37. Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer.
Cotto KC; Feng YY; Ramu A; Richters M; Freshour SL; Skidmore ZL; Xia H; McMichael JF; Kunisaki J; Campbell KM; Chen TH; Rozycki EB; Adkins D; Devarakonda S; Sankararaman S; Lin Y; Chapman WC; Maher CA; Arora V; Dunn GP; Uppaluri R; Govindan R; Griffith OL; Griffith M
Nat Commun; 2023 Mar; 14(1):1589. PubMed ID: 36949070
[TBL] [Abstract][Full Text] [Related]
38. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.
Sheynkman GM; Shortreed MR; Frey BL; Smith LM
Mol Cell Proteomics; 2013 Aug; 12(8):2341-53. PubMed ID: 23629695
[TBL] [Abstract][Full Text] [Related]
39. Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
Castle J; Garrett-Engele P; Armour CD; Duenwald SJ; Loerch PM; Meyer MR; Schadt EE; Stoughton R; Parrish ML; Shoemaker DD; Johnson JM
Genome Biol; 2003; 4(10):R66. PubMed ID: 14519201
[TBL] [Abstract][Full Text] [Related]
40. SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency.
de Melo Costa VR; Pfeuffer J; Louloupi A; Ørom UAV; Piro RM
BMC Bioinformatics; 2021 Jul; 22(1):368. PubMed ID: 34266387
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]