These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

179 related articles for article (PubMed ID: 37962425)

  • 1. RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.
    Haft DH; Badretdin A; Coulouris G; DiCuccio M; Durkin AS; Jovenitti E; Li W; Mersha M; O'Neill KR; Virothaisakun J; Thibaud-Nissen F
    Nucleic Acids Res; 2024 Jan; 52(D1):D762-D769. PubMed ID: 37962425
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
    Li W; O'Neill KR; Haft DH; DiCuccio M; Chetvernin V; Badretdin A; Coulouris G; Chitsaz F; Derbyshire MK; Durkin AS; Gonzales NR; Gwadz M; Lanczycki CJ; Song JS; Thanki N; Wang J; Yamashita RA; Yang M; Zheng C; Marchler-Bauer A; Thibaud-Nissen F
    Nucleic Acids Res; 2021 Jan; 49(D1):D1020-D1028. PubMed ID: 33270901
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RefSeq: an update on prokaryotic genome annotation and curation.
    Haft DH; DiCuccio M; Badretdin A; Brover V; Chetvernin V; O'Neill K; Li W; Chitsaz F; Derbyshire MK; Gonzales NR; Gwadz M; Lu F; Marchler GH; Song JS; Thanki N; Yamashita RA; Zheng C; Thibaud-Nissen F; Geer LY; Marchler-Bauer A; Pruitt KD
    Nucleic Acids Res; 2018 Jan; 46(D1):D851-D860. PubMed ID: 29112715
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Update on RefSeq microbial genomes resources.
    Tatusova T; Ciufo S; Federhen S; Fedorov B; McVeigh R; O'Neill K; Tolstoy I; Zaslavsky L
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D599-605. PubMed ID: 25510495
    [TBL] [Abstract][Full Text] [Related]  

  • 5. EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes.
    Zhou J; Richardson AJ; Rudd KE
    Bioinformatics; 2013 Aug; 29(15):1917-8. PubMed ID: 23736533
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of RefSeq protein-coding regions in human and vertebrate genomes.
    Fong JH; Murphy TD; Pruitt KD
    BMC Genomics; 2013 Sep; 14():654. PubMed ID: 24063302
    [TBL] [Abstract][Full Text] [Related]  

  • 7. COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
    Galperin MY; Wolf YI; Makarova KS; Vera Alvarez R; Landsman D; Koonin EV
    Nucleic Acids Res; 2021 Jan; 49(D1):D274-D281. PubMed ID: 33167031
    [TBL] [Abstract][Full Text] [Related]  

  • 8. NCBI prokaryotic genome annotation pipeline.
    Tatusova T; DiCuccio M; Badretdin A; Chetvernin V; Nawrocki EP; Zaslavsky L; Lomsadze A; Pruitt KD; Borodovsky M; Ostell J
    Nucleic Acids Res; 2016 Aug; 44(14):6614-24. PubMed ID: 27342282
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
    O'Leary NA; Wright MW; Brister JR; Ciufo S; Haddad D; McVeigh R; Rajput B; Robbertse B; Smith-White B; Ako-Adjei D; Astashyn A; Badretdin A; Bao Y; Blinkova O; Brover V; Chetvernin V; Choi J; Cox E; Ermolaeva O; Farrell CM; Goldfarb T; Gupta T; Haft D; Hatcher E; Hlavina W; Joardar VS; Kodali VK; Li W; Maglott D; Masterson P; McGarvey KM; Murphy MR; O'Neill K; Pujar S; Rangwala SH; Rausch D; Riddick LD; Schoch C; Shkeda A; Storz SS; Sun H; Thibaud-Nissen F; Tolstoy I; Tully RE; Vatsan AR; Wallin C; Webb D; Wu W; Landrum MJ; Kimchi A; Tatusova T; DiCuccio M; Kitts P; Murphy TD; Pruitt KD
    Nucleic Acids Res; 2016 Jan; 44(D1):D733-45. PubMed ID: 26553804
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RefSeq: an update on mammalian reference sequences.
    Pruitt KD; Brown GR; Hiatt SM; Thibaud-Nissen F; Astashyn A; Ermolaeva O; Farrell CM; Hart J; Landrum MJ; McGarvey KM; Murphy MR; O'Leary NA; Pujar S; Rajput B; Rangwala SH; Riddick LD; Shkeda A; Sun H; Tamez P; Tully RE; Wallin C; Webb D; Weber J; Wu W; DiCuccio M; Kitts P; Maglott DR; Murphy TD; Ostell JM
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D756-63. PubMed ID: 24259432
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.
    Pruitt KD; Tatusova T; Brown GR; Maglott DR
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D130-5. PubMed ID: 22121212
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.
    Pruitt KD; Tatusova T; Maglott DR
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D61-5. PubMed ID: 17130148
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.
    Tanizawa Y; Fujisawa T; Arita M; Nakamura Y
    Methods Mol Biol; 2019; 1962():215-226. PubMed ID: 31020563
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VADR: validation and annotation of virus sequence submissions to GenBank.
    Schäffer AA; Hatcher EL; Yankie L; Shonkwiler L; Brister JR; Karsch-Mizrachi I; Nawrocki EP
    BMC Bioinformatics; 2020 May; 21(1):211. PubMed ID: 32448124
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improving prokaryotic transposable elements identification using a combination of de novo and profile HMM methods.
    Kamoun C; Payen T; Hua-Van A; Filée J
    BMC Genomics; 2013 Oct; 14():700. PubMed ID: 24118975
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RefSeq microbial genomes database: new representation and annotation strategy.
    Tatusova T; Ciufo S; Fedorov B; O'Neill K; Tolstoy I
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D553-9. PubMed ID: 24316578
    [TBL] [Abstract][Full Text] [Related]  

  • 18. [Comprehensive re-annotation of protein-coding genes for prokaryotic genomes by Z-curve and similarity-based methods].
    Liu S; Zeng Z; Zeng FC; Du MZ
    Yi Chuan; 2020 Jul; 42(7):691-702. PubMed ID: 32694108
    [TBL] [Abstract][Full Text] [Related]  

  • 19. VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank.
    Shean RC; Makhsous N; Stoddard GD; Lin MJ; Greninger AL
    BMC Bioinformatics; 2019 Jan; 20(1):48. PubMed ID: 30674273
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.
    Yin X; Jiang XT; Chai B; Li L; Yang Y; Cole JR; Tiedje JM; Zhang T
    Bioinformatics; 2018 Jul; 34(13):2263-2270. PubMed ID: 29408954
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.