172 related articles for article (PubMed ID: 37976215)
1. kGWASflow: a modular, flexible, and reproducible Snakemake workflow for k-mers-based GWAS.
Corut AK; Wallace JG
G3 (Bethesda); 2023 Dec; 14(1):. PubMed ID: 37976215
[TBL] [Abstract][Full Text] [Related]
2. RASflow: an RNA-Seq analysis workflow with Snakemake.
Zhang X; Jonassen I
BMC Bioinformatics; 2020 Mar; 21(1):110. PubMed ID: 32183729
[TBL] [Abstract][Full Text] [Related]
3. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
Welzel M; Lange A; Heider D; Schwarz M; Freisleben B; Jensen M; Boenigk J; Beisser D
BMC Bioinformatics; 2020 Nov; 21(1):526. PubMed ID: 33198651
[TBL] [Abstract][Full Text] [Related]
4. MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq.
Weber T; Cosenza MR; Korbel J
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37851409
[TBL] [Abstract][Full Text] [Related]
5. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
Herrick N; Walsh S
BMC Bioinformatics; 2023 Nov; 24(1):424. PubMed ID: 37940870
[TBL] [Abstract][Full Text] [Related]
6. TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data.
Pan J; Li X; Zhang M; Lu Y; Zhu Y; Wu K; Wu Y; Wang W; Chen B; Liu Z; Wang X; Gao J
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36469333
[TBL] [Abstract][Full Text] [Related]
7. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
[TBL] [Abstract][Full Text] [Related]
8. BIGwas: Single-command quality control and association testing for multi-cohort and biobank-scale GWAS/PheWAS data.
Kässens JC; Wienbrandt L; Ellinghaus D
Gigascience; 2021 Jun; 10(6):. PubMed ID: 34184051
[TBL] [Abstract][Full Text] [Related]
9.
Karikari B; Lemay MA; Belzile F
Genes (Basel); 2023 Jul; 14(7):. PubMed ID: 37510343
[TBL] [Abstract][Full Text] [Related]
10. Mapache: a flexible pipeline to map ancient DNA.
Neuenschwander S; Cruz Dávalos DI; Anchieri L; Sousa da Mota B; Bozzi D; Rubinacci S; Delaneau O; Rasmussen S; Malaspinas AS
Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36637197
[TBL] [Abstract][Full Text] [Related]
11. snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data.
Vasilopoulou C; Wingfield B; Morris AP; Duddy W
F1000Res; 2021; 10():567. PubMed ID: 34900230
[TBL] [Abstract][Full Text] [Related]
12. GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
Kutschera VE; Kierczak M; van der Valk T; von Seth J; Dussex N; Lord E; Dehasque M; Stanton DWG; Khoonsari PE; Nystedt B; Dalén L; Díez-Del-Molino D
BMC Bioinformatics; 2022 Jun; 23(1):228. PubMed ID: 35698034
[TBL] [Abstract][Full Text] [Related]
13. vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA.
Vogt F; Shirsekar G; Weigel D
Bioinformatics; 2022 Jan; 38(3):839-840. PubMed ID: 34636840
[TBL] [Abstract][Full Text] [Related]
14. SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.
Krapohl J; Pickett BE
F1000Res; 2022; 11():265. PubMed ID: 37469625
[TBL] [Abstract][Full Text] [Related]
15. HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes.
Adams TM; Smith M; Wang Y; Brown LH; Bayer MM; Hein I
BMC Bioinformatics; 2023 May; 24(1):204. PubMed ID: 37198529
[TBL] [Abstract][Full Text] [Related]
16. Quantitative genetics: pan-genomes, SVs, and k-mers for GWAS.
Gupta PK
Trends Genet; 2021 Oct; 37(10):868-871. PubMed ID: 34183185
[TBL] [Abstract][Full Text] [Related]
17. scalepopgen: Bioinformatic Workflow Resources Implemented in Nextflow for Comprehensive Population Genomic Analyses.
Upadhyay M; Pogorevc N; Medugorac I
Mol Biol Evol; 2024 Apr; 41(4):. PubMed ID: 38507648
[TBL] [Abstract][Full Text] [Related]
18. ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw.
Milosavljevic S; Kuo T; Decarli S; Mohn L; Sese J; Shimizu KK; Shimizu-Inatsugi R; Robinson MD
BMC Genomics; 2021 Jul; 22(1):547. PubMed ID: 34273949
[TBL] [Abstract][Full Text] [Related]
19. H3AGWAS: a portable workflow for genome wide association studies.
Brandenburg JT; Clark L; Botha G; Panji S; Baichoo S; Fields C; Hazelhurst S
BMC Bioinformatics; 2022 Nov; 23(1):498. PubMed ID: 36402955
[TBL] [Abstract][Full Text] [Related]
20. yQTL Pipeline: A structured computational workflow for large scale quantitative trait loci discovery and downstream visualization.
Li M; Song Z; Gurinovich A; Schork N; Sebastiani P; Monti S
PLoS One; 2024; 19(6):e0298501. PubMed ID: 38833463
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]