BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 37978244)

  • 41. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.
    Sim SB; Corpuz RL; Simmonds TJ; Geib SM
    BMC Genomics; 2022 Feb; 23(1):157. PubMed ID: 35193521
    [TBL] [Abstract][Full Text] [Related]  

  • 42. High-throughput sequence alignment using Graphics Processing Units.
    Schatz MC; Trapnell C; Delcher AL; Varshney A
    BMC Bioinformatics; 2007 Dec; 8():474. PubMed ID: 18070356
    [TBL] [Abstract][Full Text] [Related]  

  • 43. PBSIM3: a simulator for all types of PacBio and ONT long reads.
    Ono Y; Hamada M; Asai K
    NAR Genom Bioinform; 2022 Dec; 4(4):lqac092. PubMed ID: 36465498
    [TBL] [Abstract][Full Text] [Related]  

  • 44. HQAlign: Aligning nanopore reads for SV detection using current-level modeling.
    Joshi D; Diggavi S; Chaisson MJP; Kannan S
    bioRxiv; 2023 Jan; ():. PubMed ID: 36712127
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.
    Chu J; Mohamadi H; Warren RL; Yang C; Birol I
    Bioinformatics; 2017 Apr; 33(8):1261-1270. PubMed ID: 28003261
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the
    Cui J; Shen N; Lu Z; Xu G; Wang Y; Jin B
    Plant Methods; 2020; 16():85. PubMed ID: 32536962
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Comparing assembly strategies for third-generation sequencing technologies across different genomes.
    Espinosa E; Bautista R; Fernandez I; Larrosa R; Zapata EL; Plata O
    Genomics; 2023 Sep; 115(5):110700. PubMed ID: 37598732
    [TBL] [Abstract][Full Text] [Related]  

  • 48. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Benchmarking of long-read correction methods.
    Dohm JC; Peters P; Stralis-Pavese N; Himmelbauer H
    NAR Genom Bioinform; 2020 Jun; 2(2):lqaa037. PubMed ID: 33575591
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Nanopore Sequencing for Mycobacterium tuberculosis: a Critical Review of the Literature, New Developments, and Future Opportunities.
    Dippenaar A; Goossens SN; Grobbelaar M; Oostvogels S; Cuypers B; Laukens K; Meehan CJ; Warren RM; van Rie A
    J Clin Microbiol; 2022 Jan; 60(1):e0064621. PubMed ID: 34133895
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
    Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
    Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
    Blom J; Jakobi T; Doppmeier D; Jaenicke S; Kalinowski J; Stoye J; Goesmann A
    Bioinformatics; 2011 May; 27(10):1351-8. PubMed ID: 21450712
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Long-read sequencing across the C9orf72 'GGGGCC' repeat expansion: implications for clinical use and genetic discovery efforts in human disease.
    Ebbert MTW; Farrugia SL; Sens JP; Jansen-West K; Gendron TF; Prudencio M; McLaughlin IJ; Bowman B; Seetin M; DeJesus-Hernandez M; Jackson J; Brown PH; Dickson DW; van Blitterswijk M; Rademakers R; Petrucelli L; Fryer JD
    Mol Neurodegener; 2018 Aug; 13(1):46. PubMed ID: 30126445
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes.
    Karin BR; Arellano S; Wang L; Walzer K; Pomerantz A; Vasquez JM; Chatla K; Sudmant PH; Bach BH; Smith LL; McGuire JA
    BMC Genomics; 2023 May; 24(1):229. PubMed ID: 37131128
    [TBL] [Abstract][Full Text] [Related]  

  • 55. LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.
    Fukasawa Y; Ermini L; Wang H; Carty K; Cheung MS
    G3 (Bethesda); 2020 Apr; 10(4):1193-1196. PubMed ID: 32041730
    [TBL] [Abstract][Full Text] [Related]  

  • 56. PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment.
    Yeh CC; Amorosi CJ; Showman S; Dunham MJ
    Bioinformatics; 2022 May; 38(10):2927-2929. PubMed ID: 35561209
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Comparison of Single Molecule, Real-Time Sequencing and Nanopore Sequencing for Analysis of the Size, End-Motif, and Tissue-of-Origin of Long Cell-Free DNA in Plasma.
    Yu SCY; Deng J; Qiao R; Cheng SH; Peng W; Lau SL; Choy LYL; Leung TY; Wong J; Wong VW; Wong GLH; Jiang P; Chiu RWK; Chan KCA; Lo YMD
    Clin Chem; 2023 Feb; 69(2):168-179. PubMed ID: 36322427
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Arioc: High-concurrency short-read alignment on multiple GPUs.
    Wilton R; Szalay AS
    PLoS Comput Biol; 2020 Nov; 16(11):e1008383. PubMed ID: 33166275
    [TBL] [Abstract][Full Text] [Related]  

  • 59. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns.
    Mikheenko A; Prjibelski AD; Joglekar A; Tilgner HU
    Genome Res; 2022 Apr; 32(4):726-737. PubMed ID: 35301264
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.