179 related articles for article (PubMed ID: 37985809)
1. How AlphaFold2 shaped the structural coverage of the human transmembrane proteome.
Jambrich MA; Tusnady GE; Dobson L
Sci Rep; 2023 Nov; 13(1):20283. PubMed ID: 37985809
[TBL] [Abstract][Full Text] [Related]
2. TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures.
Dobson L; Szekeres LI; Gerdán C; Langó T; Zeke A; Tusnády GE
Nucleic Acids Res; 2023 Jan; 51(D1):D517-D522. PubMed ID: 36318239
[TBL] [Abstract][Full Text] [Related]
3. Outer membrane β-barrel structure prediction through the lens of AlphaFold2.
Topitsch A; Schwede T; Pereira J
Proteins; 2024 Jan; 92(1):3-14. PubMed ID: 37465978
[TBL] [Abstract][Full Text] [Related]
4. AlphaFold2 and its applications in the fields of biology and medicine.
Yang Z; Zeng X; Zhao Y; Chen R
Signal Transduct Target Ther; 2023 Mar; 8(1):115. PubMed ID: 36918529
[TBL] [Abstract][Full Text] [Related]
5. Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology.
Tordai H; Suhajda E; Sillitoe I; Nair S; Varadi M; Hegedus T
Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012140
[TBL] [Abstract][Full Text] [Related]
6. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.
Li EH; Spaman LE; Tejero R; Janet Huang Y; Ramelot TA; Fraga KJ; Prestegard JH; Kennedy MA; Montelione GT
J Magn Reson; 2023 Jul; 352():107481. PubMed ID: 37257257
[TBL] [Abstract][Full Text] [Related]
7. A structural biology community assessment of AlphaFold2 applications.
Akdel M; Pires DEV; Pardo EP; Jänes J; Zalevsky AO; Mészáros B; Bryant P; Good LL; Laskowski RA; Pozzati G; Shenoy A; Zhu W; Kundrotas P; Serra VR; Rodrigues CHM; Dunham AS; Burke D; Borkakoti N; Velankar S; Frost A; Basquin J; Lindorff-Larsen K; Bateman A; Kajava AV; Valencia A; Ovchinnikov S; Durairaj J; Ascher DB; Thornton JM; Davey NE; Stein A; Elofsson A; Croll TI; Beltrao P
Nat Struct Mol Biol; 2022 Nov; 29(11):1056-1067. PubMed ID: 36344848
[TBL] [Abstract][Full Text] [Related]
8. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
[TBL] [Abstract][Full Text] [Related]
9. Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery.
Zhang Y; Vass M; Shi D; Abualrous E; Chambers JM; Chopra N; Higgs C; Kasavajhala K; Li H; Nandekar P; Sato H; Miller EB; Repasky MP; Jerome SV
J Chem Inf Model; 2023 Mar; 63(6):1656-1667. PubMed ID: 36897766
[TBL] [Abstract][Full Text] [Related]
10. Digging into the 3D Structure Predictions of AlphaFold2 with Low Confidence: Disorder and Beyond.
Bruley A; Mornon JP; Duprat E; Callebaut I
Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291675
[TBL] [Abstract][Full Text] [Related]
11. Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.
Meng Q; Guo F; Tang J
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37321965
[TBL] [Abstract][Full Text] [Related]
12. Sampling alternative conformational states of transporters and receptors with AlphaFold2.
Del Alamo D; Sala D; Mchaourab HS; Meiler J
Elife; 2022 Mar; 11():. PubMed ID: 35238773
[TBL] [Abstract][Full Text] [Related]
13. Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15.
Peng Z; Wang W; Wei H; Li X; Yang J
Proteins; 2023 Dec; 91(12):1704-1711. PubMed ID: 37565699
[TBL] [Abstract][Full Text] [Related]
14. Template-free prediction of a new monotopic membrane protein fold and assembly by AlphaFold2.
Gulsevin A; Han B; Porta JC; Mchaourab HS; Meiler J; Kenworthy AK
Biophys J; 2023 Jun; 122(11):2041-2052. PubMed ID: 36352786
[TBL] [Abstract][Full Text] [Related]
15. A Perspective on the Prospective Use of AI in Protein Structure Prediction.
Versini R; Sritharan S; Aykac Fas B; Tubiana T; Aimeur SZ; Henri J; Erard M; Nüsse O; Andreani J; Baaden M; Fuchs P; Galochkina T; Chatzigoulas A; Cournia Z; Santuz H; Sacquin-Mora S; Taly A
J Chem Inf Model; 2024 Jan; 64(1):26-41. PubMed ID: 38124369
[TBL] [Abstract][Full Text] [Related]
16. Ins and outs of AlphaFold2 transmembrane protein structure predictions.
Hegedűs T; Geisler M; Lukács GL; Farkas B
Cell Mol Life Sci; 2022 Jan; 79(1):73. PubMed ID: 35034173
[TBL] [Abstract][Full Text] [Related]
17. The Origin of Discrepancies between Predictions and Annotations in Intrinsically Disordered Proteins.
Pajkos M; Erdős G; Dosztányi Z
Biomolecules; 2023 Sep; 13(10):. PubMed ID: 37892124
[TBL] [Abstract][Full Text] [Related]
18. Structural coverage of the human interactome.
Kosoglu K; Aydin Z; Tuncbag N; Gursoy A; Keskin O
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38180828
[TBL] [Abstract][Full Text] [Related]
19. AlphaFold2 models indicate that protein sequence determines both structure and dynamics.
Guo HB; Perminov A; Bekele S; Kedziora G; Farajollahi S; Varaljay V; Hinkle K; Molinero V; Meister K; Hung C; Dennis P; Kelley-Loughnane N; Berry R
Sci Rep; 2022 Jun; 12(1):10696. PubMed ID: 35739160
[TBL] [Abstract][Full Text] [Related]
20. Assessment of AlphaFold2 for Human Proteins via Residue Solvent Exposure.
Bæk KT; Kepp KP
J Chem Inf Model; 2022 Jul; 62(14):3391-3400. PubMed ID: 35785970
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
