296 related articles for article (PubMed ID: 38000912)
1. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
2. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
Chen Z; Erickson DL; Meng J
Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
[TBL] [Abstract][Full Text] [Related]
4. Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.
Zhang T; Xing W; Wang A; Zhang N; Jia L; Ma S; Xia Q
Int J Mol Sci; 2022 Dec; 24(1):. PubMed ID: 36614092
[TBL] [Abstract][Full Text] [Related]
5. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
6. Benchmarking of next and third generation sequencing technologies and their associated algorithms for
Gavrielatos M; Kyriakidis K; Spandidos DA; Michalopoulos I
Mol Med Rep; 2021 Apr; 23(4):. PubMed ID: 33537807
[TBL] [Abstract][Full Text] [Related]
7. Benchmarking of long-read assemblers for prokaryote whole genome sequencing.
Wick RR; Holt KE
F1000Res; 2019; 8():2138. PubMed ID: 31984131
[No Abstract] [Full Text] [Related]
8. Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes.
Yu W; Luo H; Yang J; Zhang S; Jiang H; Zhao X; Hui X; Sun D; Li L; Wei XQ; Lonardi S; Pan W
Genome Res; 2024 Mar; 34(2):326-340. PubMed ID: 38428994
[TBL] [Abstract][Full Text] [Related]
9. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
10. Comparing assembly strategies for third-generation sequencing technologies across different genomes.
Espinosa E; Bautista R; Fernandez I; Larrosa R; Zapata EL; Plata O
Genomics; 2023 Sep; 115(5):110700. PubMed ID: 37598732
[TBL] [Abstract][Full Text] [Related]
11. Comparative Evaluation of Genome Assemblers from Long-Read Sequencing for Plants and Crops.
Jung H; Jeon MS; Hodgett M; Waterhouse P; Eyun SI
J Agric Food Chem; 2020 Jul; 68(29):7670-7677. PubMed ID: 32530283
[TBL] [Abstract][Full Text] [Related]
12. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
13. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
14. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
[TBL] [Abstract][Full Text] [Related]
15. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
16. NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model.
Wei ZG; Zhang SW
BMC Bioinformatics; 2018 May; 19(1):177. PubMed ID: 29788930
[TBL] [Abstract][Full Text] [Related]
17. Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
Guiglielmoni N; Houtain A; Derzelle A; Van Doninck K; Flot JF
BMC Bioinformatics; 2021 Jun; 22(1):303. PubMed ID: 34090340
[TBL] [Abstract][Full Text] [Related]
18. ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of
Bologa AM; Stoica I; Ratiu AC; Constantin ND; Ecovoiu AA
Int J Mol Sci; 2022 Nov; 23(23):. PubMed ID: 36499217
[TBL] [Abstract][Full Text] [Related]
19. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
[TBL] [Abstract][Full Text] [Related]
20. The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing.
Safar HA; Alatar F; Nasser K; Al-Ajmi R; Alfouzan W; Mustafa AS
BMC Biotechnol; 2023 Jul; 23(1):26. PubMed ID: 37525145
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]