These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 38012590)

  • 1. scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis.
    Nale V; Chiodi A; Di Nanni N; Cifola I; Moscatelli M; Cocola C; Gnocchi M; Piscitelli E; Sula A; Zucchi I; Reinbold R; Milanesi L; Mezzelani A; Pelucchi P; Mosca E
    BMC Bioinformatics; 2023 Nov; 24(1):445. PubMed ID: 38012590
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data.
    Tiong KL; Luzhbin D; Yeang CH
    BMC Bioinformatics; 2024 Jun; 25(1):209. PubMed ID: 38867193
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Characterization of gene cluster heterogeneity in single-cell transcriptomic data within and across cancer types.
    Tiong KL; Lin YW; Yeang CH
    Biol Open; 2022 Jun; 11(6):. PubMed ID: 35665803
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data.
    Sun Z; Wang T; Deng K; Wang XF; Lafyatis R; Ding Y; Hu M; Chen W
    Bioinformatics; 2018 Jan; 34(1):139-146. PubMed ID: 29036318
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High-grade serous tubo-ovarian cancer refined with single-cell RNA sequencing: specific cell subtypes influence survival and determine molecular subtype classification.
    Olbrecht S; Busschaert P; Qian J; Vanderstichele A; Loverix L; Van Gorp T; Van Nieuwenhuysen E; Han S; Van den Broeck A; Coosemans A; Van Rompuy AS; Lambrechts D; Vergote I
    Genome Med; 2021 Jul; 13(1):111. PubMed ID: 34238352
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data.
    Davis-Marcisak EF; Sherman TD; Orugunta P; Stein-O'Brien GL; Puram SV; Roussos Torres ET; Hopkins AC; Jaffee EM; Favorov AV; Afsari B; Goff LA; Fertig EJ
    Cancer Res; 2019 Oct; 79(19):5102-5112. PubMed ID: 31337651
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromosomal Instability Estimation Based on Next Generation Sequencing and Single Cell Genome Wide Copy Number Variation Analysis.
    Greene SB; Dago AE; Leitz LJ; Wang Y; Lee J; Werner SL; Gendreau S; Patel P; Jia S; Zhang L; Tucker EK; Malchiodi M; Graf RP; Dittamore R; Marrinucci D; Landers M
    PLoS One; 2016; 11(11):e0165089. PubMed ID: 27851748
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing.
    Nelson ME; Riva SG; Cvejic A
    BMC Bioinformatics; 2022 Aug; 23(1):328. PubMed ID: 35941549
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.
    Li H; Courtois ET; Sengupta D; Tan Y; Chen KH; Goh JJL; Kong SL; Chua C; Hon LK; Tan WS; Wong M; Choi PJ; Wee LJK; Hillmer AM; Tan IB; Robson P; Prabhakar S
    Nat Genet; 2017 May; 49(5):708-718. PubMed ID: 28319088
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland.
    Henry S; Trousdell MC; Cyrill SL; Zhao Y; Feigman MJ; Bouhuis JM; Aylard DA; Siepel A; Dos Santos CO
    J Mammary Gland Biol Neoplasia; 2021 Mar; 26(1):43-66. PubMed ID: 33988830
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Artificial Intelligence in Bulk and Single-Cell RNA-Sequencing Data to Foster Precision Oncology.
    Del Giudice M; Peirone S; Perrone S; Priante F; Varese F; Tirtei E; Fagioli F; Cereda M
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33925407
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Targeted DNA and RNA Sequencing of Paired Urothelial and Squamous Bladder Cancers Reveals Discordant Genomic and Transcriptomic Events and Unique Therapeutic Implications.
    Hovelson DH; Udager AM; McDaniel AS; Grivas P; Palmbos P; Tamura S; Lazo de la Vega L; Palapattu G; Veeneman B; El-Sawy L; Sadis SE; Morgan TM; Montgomery JS; Weizer AZ; Day KC; Neamati N; Liebert M; Keller ET; Day ML; Mehra R; Tomlins SA
    Eur Urol; 2018 Dec; 74(6):741-753. PubMed ID: 30033047
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data.
    De Falco A; Caruso F; Su XD; Iavarone A; Ceccarelli M
    Nat Commun; 2023 Feb; 14(1):1074. PubMed ID: 36841879
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions.
    Lin W; Noel P; Borazanci EH; Lee J; Amini A; Han IW; Heo JS; Jameson GS; Fraser C; Steinbach M; Woo Y; Fong Y; Cridebring D; Von Hoff DD; Park JO; Han H
    Genome Med; 2020 Sep; 12(1):80. PubMed ID: 32988401
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments.
    Ekiz HA; Conley CJ; Stephens WZ; O'Connell RM
    BMC Bioinformatics; 2020 May; 21(1):191. PubMed ID: 32414321
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells.
    Zhao Y; Carter R; Natarajan S; Varn FS; Compton DA; Gawad C; Cheng C; Godek KM
    BMC Med Genomics; 2019 May; 12(1):79. PubMed ID: 31151460
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment.
    Han Y; Wang Y; Dong X; Sun D; Liu Z; Yue J; Wang H; Li T; Wang C
    Nucleic Acids Res; 2023 Jan; 51(D1):D1425-D1431. PubMed ID: 36321662
    [TBL] [Abstract][Full Text] [Related]  

  • 18. New insights for precision treatment of glioblastoma from analysis of single-cell lncRNA expression.
    Meng Q; Zhang Y; Li G; Li Y; Xie H; Chen X
    J Cancer Res Clin Oncol; 2021 Jul; 147(7):1881-1895. PubMed ID: 33693962
    [TBL] [Abstract][Full Text] [Related]  

  • 19. EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data.
    Racle J; Gfeller D
    Methods Mol Biol; 2020; 2120():233-248. PubMed ID: 32124324
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Applications of single-cell sequencing in cancer research: progress and perspectives.
    Lei Y; Tang R; Xu J; Wang W; Zhang B; Liu J; Yu X; Shi S
    J Hematol Oncol; 2021 Jun; 14(1):91. PubMed ID: 34108022
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.