BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

197 related articles for article (PubMed ID: 38019768)

  • 1. SAKE: Strobemer-assisted k-mer extraction.
    Leinonen M; Salmela L
    PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DSK: k-mer counting with very low memory usage.
    Rizk G; Lavenier D; Chikhi R
    Bioinformatics; 2013 Mar; 29(5):652-3. PubMed ID: 23325618
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Extraction of long k-mers using spaced seeds.
    Leinonen M; Salmela L
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Sep; PP():. PubMed ID: 34529572
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effective sequence similarity detection with strobemers.
    Sahlin K
    Genome Res; 2021 Nov; 31(11):2080-2094. PubMed ID: 34667119
    [No Abstract]   [Full Text] [Related]  

  • 5. These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.
    Zhang Q; Pell J; Canino-Koning R; Howe AC; Brown CT
    PLoS One; 2014; 9(7):e101271. PubMed ID: 25062443
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing.
    Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S
    BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Squeakr: an exact and approximate k-mer counting system.
    Pandey P; Bender MA; Johnson R; Patro R; Berger B
    Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A general near-exact k-mer counting method with low memory consumption enables de novo assembly of 106× human sequence data in 2.7 hours.
    Shi CH; Yip KY
    Bioinformatics; 2020 Dec; 36(Suppl_2):i625-i633. PubMed ID: 33381843
    [TBL] [Abstract][Full Text] [Related]  

  • 9. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
    Das AK; Goswami S; Lee K; Park SJ
    BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SPRISS: approximating frequent k-mers by sampling reads, and applications.
    Santoro D; Pellegrina L; Comin M; Vandin F
    Bioinformatics; 2022 Jun; 38(13):3343-3350. PubMed ID: 35583271
    [TBL] [Abstract][Full Text] [Related]  

  • 13. KmerStream: streaming algorithms for k-mer abundance estimation.
    Melsted P; Halldórsson BV
    Bioinformatics; 2014 Dec; 30(24):3541-7. PubMed ID: 25355787
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.
    Marçais G; Kingsford C
    Bioinformatics; 2011 Mar; 27(6):764-70. PubMed ID: 21217122
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
    Haznedaroglu BZ; Reeves D; Rismani-Yazdi H; Peccia J
    BMC Bioinformatics; 2012 Jul; 13():170. PubMed ID: 22808927
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to
    Shibuya Y; Belazzougui D; Kucherov G
    J Comput Biol; 2022 Feb; 29(2):140-154. PubMed ID: 35049334
    [No Abstract]   [Full Text] [Related]  

  • 17. Fast Approximation of Frequent
    Pellegrina L; Pizzi C; Vandin F
    J Comput Biol; 2020 Apr; 27(4):534-549. PubMed ID: 31891535
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improved assembly of noisy long reads by k-mer validation.
    Carvalho AB; Dupim EG; Goldstein G
    Genome Res; 2016 Dec; 26(12):1710-1720. PubMed ID: 27831497
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.
    Akogwu I; Wang N; Zhang C; Gong P
    Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CARE 2.0: reducing false-positive sequencing error corrections using machine learning.
    Kallenborn F; Cascitti J; Schmidt B
    BMC Bioinformatics; 2022 Jun; 23(1):227. PubMed ID: 35698033
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.