These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 38036790)

  • 1. Personal transcriptome variation is poorly explained by current genomic deep learning models.
    Huang C; Shuai RW; Baokar P; Chung R; Rastogi R; Kathail P; Ioannidis NM
    Nat Genet; 2023 Dec; 55(12):2056-2059. PubMed ID: 38036790
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.
    Li Y; Shi W; Wasserman WW
    BMC Bioinformatics; 2018 May; 19(1):202. PubMed ID: 29855387
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings.
    Sasse A; Ng B; Spiro AE; Tasaki S; Bennett DA; Gaiteri C; De Jager PL; Chikina M; Mostafavi S
    bioRxiv; 2023 Sep; ():. PubMed ID: 36993652
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings.
    Sasse A; Ng B; Spiro AE; Tasaki S; Bennett DA; Gaiteri C; De Jager PL; Chikina M; Mostafavi S
    Nat Genet; 2023 Dec; 55(12):2060-2064. PubMed ID: 38036778
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DeepPerVar: a multi-modal deep learning framework for functional interpretation of genetic variants in personal genome.
    Wang Y; Chen L
    Bioinformatics; 2022 Dec; 38(24):5340-5351. PubMed ID: 36271868
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Transcriptome and genome sequencing uncovers functional variation in humans.
    Lappalainen T; Sammeth M; Friedländer MR; 't Hoen PA; Monlong J; Rivas MA; Gonzàlez-Porta M; Kurbatova N; Griebel T; Ferreira PG; Barann M; Wieland T; Greger L; van Iterson M; Almlöf J; Ribeca P; Pulyakhina I; Esser D; Giger T; Tikhonov A; Sultan M; Bertier G; MacArthur DG; Lek M; Lizano E; Buermans HP; Padioleau I; Schwarzmayr T; Karlberg O; Ongen H; Kilpinen H; Beltran S; Gut M; Kahlem K; Amstislavskiy V; Stegle O; Pirinen M; Montgomery SB; Donnelly P; McCarthy MI; Flicek P; Strom TM; ; Lehrach H; Schreiber S; Sudbrak R; Carracedo A; Antonarakis SE; Häsler R; Syvänen AC; van Ommen GJ; Brazma A; Meitinger T; Rosenstiel P; Guigó R; Gut IG; Estivill X; Dermitzakis ET
    Nature; 2013 Sep; 501(7468):506-11. PubMed ID: 24037378
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving the performance of supervised deep learning for regulatory genomics using phylogenetic augmentation.
    Duncan AG; Mitchell JA; Moses AM
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38588559
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Current genomic deep learning models display decreased performance in cell type specific accessible regions.
    Kathail P; Shuai RW; Chung R; Ye CJ; Loeb GB; Ioannidis NM
    bioRxiv; 2024 Jul; ():. PubMed ID: 39026761
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants.
    Zhao H; Tu Z; Liu Y; Zong Z; Li J; Liu H; Xiong F; Zhan J; Hu X; Xie W
    Nucleic Acids Res; 2021 Jul; 49(W1):W523-W529. PubMed ID: 34037796
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Off the deep end: What can deep learning do for the gene expression field?
    Raicu AM; Fay JC; Rohner N; Zeitlinger J; Arnosti DN
    J Biol Chem; 2023 Jan; 299(1):102760. PubMed ID: 36462664
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning.
    Atak ZK; Taskiran II; Demeulemeester J; Flerin C; Mauduit D; Minnoye L; Hulselmans G; Christiaens V; Ghanem GE; Wouters J; Aerts S
    Genome Res; 2021 Jun; 31(6):1082-1096. PubMed ID: 33832990
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome.
    De S; Teichmann SA; Babu MM
    Genome Res; 2009 May; 19(5):785-94. PubMed ID: 19233772
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Deciphering the regulatory syntax of genomic DNA with deep learning.
    Lal A
    J Biosci; 2022; 47():. PubMed ID: 36222139
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deep learning approach for predicting functional Z-DNA regions using omics data.
    Beknazarov N; Jin S; Poptsova M
    Sci Rep; 2020 Nov; 10(1):19134. PubMed ID: 33154517
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Whole-Transcriptome Causal Network Inference with Genomic and Transcriptomic Data.
    Wang L; Michoel T
    Methods Mol Biol; 2019; 1883():95-109. PubMed ID: 30547397
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prioritizing non-coding regions based on human genomic constraint and sequence context with deep learning.
    Vitsios D; Dhindsa RS; Middleton L; Gussow AB; Petrovski S
    Nat Commun; 2021 Mar; 12(1):1504. PubMed ID: 33686085
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring genetic architecture of complex traits using Bayesian integrative analysis of genome and transcriptome data.
    Ehsani A; Sørensen P; Pomp D; Allan M; Janss L
    BMC Genomics; 2012 Sep; 13():456. PubMed ID: 22950759
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A comprehensive review of deep learning-based variant calling methods.
    Junjun R; Zhengqian Z; Ying W; Jialiang W; Yongzhuang L
    Brief Funct Genomics; 2024 Jul; 23(4):303-313. PubMed ID: 38366908
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deep learning of genomic variation and regulatory network data.
    Telenti A; Lippert C; Chang PC; DePristo M
    Hum Mol Genet; 2018 May; 27(R1):R63-R71. PubMed ID: 29648622
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Estimating gene expression from DNA methylation and copy number variation: A deep learning regression model for multi-omics integration.
    Seal DB; Das V; Goswami S; De RK
    Genomics; 2020 Jul; 112(4):2833-2841. PubMed ID: 32234433
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.