214 related articles for article (PubMed ID: 38060265)
1. CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images.
Khare H; Dongo Mendoza N; Zurzolo C
Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38060265
[TBL] [Abstract][Full Text] [Related]
2. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
3. Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets.
Müller A; Schmidt D; Albrecht JP; Rieckert L; Otto M; Galicia Garcia LE; Fabig G; Solimena M; Weigert M
Nat Protoc; 2024 May; 19(5):1436-1466. PubMed ID: 38424188
[TBL] [Abstract][Full Text] [Related]
4. Qiber3D-an open-source software package for the quantitative analysis of networks from 3D image stacks.
Jaeschke A; Eckert H; Bray LJ
Gigascience; 2022 Feb; 11():. PubMed ID: 35134926
[TBL] [Abstract][Full Text] [Related]
5. STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.
Stoma S; Fröhlich M; Gerber S; Klipp E
BMC Bioinformatics; 2011 Apr; 12():126. PubMed ID: 21527030
[TBL] [Abstract][Full Text] [Related]
6. CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.
Hu T; Xu S; Wei L; Zhang X; Wang X
Bioinformatics; 2021 Apr; 37(2):285-287. PubMed ID: 33416830
[TBL] [Abstract][Full Text] [Related]
7. An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images.
Haass-Koffler CL; Naeemuddin M; Bartlett SE
J Vis Exp; 2012 Aug; (66):e4233. PubMed ID: 22951512
[TBL] [Abstract][Full Text] [Related]
8. PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.
Bokota G; Sroka J; Basu S; Das N; Trzaskoma P; Yushkevich Y; Grabowska A; Magalska A; Plewczynski D
BMC Bioinformatics; 2021 Feb; 22(1):72. PubMed ID: 33596823
[TBL] [Abstract][Full Text] [Related]
9. PyJAMAS: open-source, multimodal segmentation and analysis of microscopy images.
Fernandez-Gonzalez R; Balaghi N; Wang K; Hawkins R; Rothenberg K; McFaul C; Schimmer C; Ly M; do Carmo AM; Scepanovic G; Erdemci-Tandogan G; Castle V
Bioinformatics; 2022 Jan; 38(2):594-596. PubMed ID: 34390579
[TBL] [Abstract][Full Text] [Related]
10. NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks.
Abdellah M; Hernando J; Eilemann S; Lapere S; Antille N; Markram H; Schürmann F
Bioinformatics; 2018 Jul; 34(13):i574-i582. PubMed ID: 29949998
[TBL] [Abstract][Full Text] [Related]
11. ShapeMetrics: A 3D Cell Segmentation Pipeline for Single-Cell Spatial Morphometric Analysis.
Pajanoja C; Kerosuo L
Methods Mol Biol; 2024; 2767():263-273. PubMed ID: 37219813
[TBL] [Abstract][Full Text] [Related]
12. Segmentation, tracking and cell cycle analysis of live-cell imaging data with Cell-ACDC.
Padovani F; Mairhörmann B; Falter-Braun P; Lengefeld J; Schmoller KM
BMC Biol; 2022 Aug; 20(1):174. PubMed ID: 35932043
[TBL] [Abstract][Full Text] [Related]
13. Segmentor: a tool for manual refinement of 3D microscopy annotations.
Borland D; McCormick CM; Patel NK; Krupa O; Mory JT; Beltran AA; Farah TM; Escobar-Tomlienovich CF; Olson SS; Kim M; Wu G; Stein JL
BMC Bioinformatics; 2021 May; 22(1):260. PubMed ID: 34022787
[TBL] [Abstract][Full Text] [Related]
14. Quantitative analysis of subcellular distributions with an open-source, object-based tool.
Ryder PV; Lerit DA
Biol Open; 2020 Oct; 9(10):. PubMed ID: 32973081
[TBL] [Abstract][Full Text] [Related]
15. GIANI - open-source software for automated analysis of 3D microscopy images.
Barry DJ; Gerri C; Bell DM; D'Antuono R; Niakan KK
J Cell Sci; 2022 May; 135(10):. PubMed ID: 35502739
[TBL] [Abstract][Full Text] [Related]
16. 3DeeCellTracker, a deep learning-based pipeline for segmenting and tracking cells in 3D time lapse images.
Wen C; Miura T; Voleti V; Yamaguchi K; Tsutsumi M; Yamamoto K; Otomo K; Fujie Y; Teramoto T; Ishihara T; Aoki K; Nemoto T; Hillman EM; Kimura KD
Elife; 2021 Mar; 10():. PubMed ID: 33781383
[TBL] [Abstract][Full Text] [Related]
17. SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research.
Yaniv Z; Lowekamp BC; Johnson HJ; Beare R
J Digit Imaging; 2018 Jun; 31(3):290-303. PubMed ID: 29181613
[TBL] [Abstract][Full Text] [Related]
18. Open-source deep-learning software for bioimage segmentation.
Lucas AM; Ryder PV; Li B; Cimini BA; Eliceiri KW; Carpenter AE
Mol Biol Cell; 2021 Apr; 32(9):823-829. PubMed ID: 33872058
[TBL] [Abstract][Full Text] [Related]
19. SharpViSu: integrated analysis and segmentation of super-resolution microscopy data.
Andronov L; Lutz Y; Vonesch JL; Klaholz BP
Bioinformatics; 2016 Jul; 32(14):2239-41. PubMed ID: 27153691
[TBL] [Abstract][Full Text] [Related]
20. SPIM workflow manager for HPC.
Kožusznik J; Bainar P; Klímová J; Krumnikl M; Moravec P; Svatoň V; Tomančák P
Bioinformatics; 2019 Oct; 35(19):3875-3876. PubMed ID: 30799494
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]