148 related articles for article (PubMed ID: 38065099)
1. Mapping the transcriptome: Realizing the full potential of spatial data analysis.
Zormpas E; Queen R; Comber A; Cockell SJ
Cell; 2023 Dec; 186(26):5677-5689. PubMed ID: 38065099
[TBL] [Abstract][Full Text] [Related]
2. Computational solutions for spatial transcriptomics.
Kleino I; Frolovaitė P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
3. Spatial Transcriptomics: Emerging Technologies in Tissue Gene Expression Profiling.
Robles-Remacho A; Sanchez-Martin RM; Diaz-Mochon JJ
Anal Chem; 2023 Oct; 95(42):15450-15460. PubMed ID: 37814884
[TBL] [Abstract][Full Text] [Related]
4. Spatial transcriptomics: recent developments and insights in respiratory research.
Wang WJ; Chu LX; He LY; Zhang MJ; Dang KT; Gao C; Ge QY; Wang ZG; Zhao XW
Mil Med Res; 2023 Aug; 10(1):38. PubMed ID: 37592342
[TBL] [Abstract][Full Text] [Related]
5. Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.
Tanevski J; Nguyen T; Truong B; Karaiskos N; Ahsen ME; Zhang X; Shu C; Xu K; Liang X; Hu Y; Pham HV; Xiaomei L; Le TD; Tarca AL; Bhatti G; Romero R; Karathanasis N; Loher P; Chen Y; Ouyang Z; Mao D; Zhang Y; Zand M; Ruan J; Hafemeister C; Qiu P; Tran D; Nguyen T; Gabor A; Yu T; Guinney J; Glaab E; Krause R; Banda P; ; Stolovitzky G; Rajewsky N; Saez-Rodriguez J; Meyer P
Life Sci Alliance; 2020 Nov; 3(11):. PubMed ID: 32972997
[TBL] [Abstract][Full Text] [Related]
6. Mapping Gene Expression in the Spatial Dimension.
Chen Y; Qian W; Lin L; Cai L; Yin K; Jiang S; Song J; Han RPS; Yang C
Small Methods; 2021 Nov; 5(11):e2100722. PubMed ID: 34927963
[TBL] [Abstract][Full Text] [Related]
7. Giotto: a toolbox for integrative analysis and visualization of spatial expression data.
Dries R; Zhu Q; Dong R; Eng CL; Li H; Liu K; Fu Y; Zhao T; Sarkar A; Bao F; George RE; Pierson N; Cai L; Yuan GC
Genome Biol; 2021 Mar; 22(1):78. PubMed ID: 33685491
[TBL] [Abstract][Full Text] [Related]
8. Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
Liu W; Liao X; Luo Z; Yang Y; Lau MC; Jiao Y; Shi X; Zhai W; Ji H; Yeong J; Liu J
Nat Commun; 2023 Jan; 14(1):296. PubMed ID: 36653349
[TBL] [Abstract][Full Text] [Related]
9. Advances in spatial transcriptomics and related data analysis strategies.
Du J; Yang YC; An ZJ; Zhang MH; Fu XH; Huang ZF; Yuan Y; Hou J
J Transl Med; 2023 May; 21(1):330. PubMed ID: 37202762
[TBL] [Abstract][Full Text] [Related]
10. Advances in spatial transcriptomic data analysis.
Dries R; Chen J; Del Rossi N; Khan MM; Sistig A; Yuan GC
Genome Res; 2021 Oct; 31(10):1706-1718. PubMed ID: 34599004
[TBL] [Abstract][Full Text] [Related]
11. Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization.
Wang L; Liu C; Gao Y; Zhang XH; Liu Z
Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37436699
[TBL] [Abstract][Full Text] [Related]
12. Spatial transcriptomics at subspot resolution with BayesSpace.
Zhao E; Stone MR; Ren X; Guenthoer J; Smythe KS; Pulliam T; Williams SR; Uytingco CR; Taylor SEB; Nghiem P; Bielas JH; Gottardo R
Nat Biotechnol; 2021 Nov; 39(11):1375-1384. PubMed ID: 34083791
[TBL] [Abstract][Full Text] [Related]
13. Spatial Transcriptomics: Technical Aspects of Recent Developments and Their Applications in Neuroscience and Cancer Research.
Park HE; Jo SH; Lee RH; Macks CP; Ku T; Park J; Lee CW; Hur JK; Sohn CH
Adv Sci (Weinh); 2023 Jun; 10(16):e2206939. PubMed ID: 37026425
[TBL] [Abstract][Full Text] [Related]
14. Integration of Computational Analysis and Spatial Transcriptomics in Single-cell Studies.
Wang R; Peng G; Tam PPL; Jing N
Genomics Proteomics Bioinformatics; 2023 Feb; 21(1):13-23. PubMed ID: 35901961
[TBL] [Abstract][Full Text] [Related]
15. Spatially aware dimension reduction for spatial transcriptomics.
Shang L; Zhou X
Nat Commun; 2022 Nov; 13(1):7203. PubMed ID: 36418351
[TBL] [Abstract][Full Text] [Related]
16. Spage2vec: Unsupervised representation of localized spatial gene expression signatures.
Partel G; Wählby C
FEBS J; 2021 Mar; 288(6):1859-1870. PubMed ID: 32976679
[TBL] [Abstract][Full Text] [Related]
17. CROST: a comprehensive repository of spatial transcriptomics.
Wang G; Wu S; Xiong Z; Qu H; Fang X; Bao Y
Nucleic Acids Res; 2024 Jan; 52(D1):D882-D890. PubMed ID: 37791883
[TBL] [Abstract][Full Text] [Related]
18. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
[TBL] [Abstract][Full Text] [Related]
19. Spatial mapping of the total transcriptome by in situ polyadenylation.
McKellar DW; Mantri M; Hinchman MM; Parker JSL; Sethupathy P; Cosgrove BD; De Vlaminck I
Nat Biotechnol; 2023 Apr; 41(4):513-520. PubMed ID: 36329320
[TBL] [Abstract][Full Text] [Related]
20. Identifying spatial domain by adapting transcriptomics with histology through contrastive learning.
Zeng Y; Yin R; Luo M; Chen J; Pan Z; Lu Y; Yu W; Yang Y
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36781228
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]