143 related articles for article (PubMed ID: 38069324)
1. Comparative RNA-Seq Analysis Revealed Tissue-Specific Splicing Variations during the Generation of the PDX Model.
Lee EJ; Noh SJ; Choi H; Kim MW; Kim SJ; Seo YA; Jeong JE; Shin I; Kim JS; Choi JK; Cho DY; Chang S
Int J Mol Sci; 2023 Nov; 24(23):. PubMed ID: 38069324
[TBL] [Abstract][Full Text] [Related]
2. Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens.
Liao W; Jordaan G; Nham P; Phan RT; Pelegrini M; Sharma S
BMC Cancer; 2015 Oct; 15():714. PubMed ID: 26474785
[TBL] [Abstract][Full Text] [Related]
3. Universal Alternative Splicing of Noncoding Exons.
Deveson IW; Brunck ME; Blackburn J; Tseng E; Hon T; Clark TA; Clark MB; Crawford J; Dinger ME; Nielsen LK; Mattick JS; Mercer TR
Cell Syst; 2018 Feb; 6(2):245-255.e5. PubMed ID: 29396323
[TBL] [Abstract][Full Text] [Related]
4. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
5. Novel cancer gene variants and gene fusions of triple-negative breast cancers (TNBCs) reveal their molecular diversity conserved in the patient-derived xenograft (PDX) model.
Jung J; Jang K; Ju JM; Lee E; Lee JW; Kim HJ; Kim J; Lee SB; Ko BS; Son BH; Lee HJ; Gong G; Ahn SY; Choi JK; Singh SR; Chang S
Cancer Lett; 2018 Aug; 428():127-138. PubMed ID: 29684420
[TBL] [Abstract][Full Text] [Related]
6. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
[TBL] [Abstract][Full Text] [Related]
7. [Establishment of a patient-derived xenograft humanized mouse model for hepatoblastoma in children].
Hu HM; Zhang WL; Huang DS; Li R; Gu HL; Li J; Gao YN
Zhonghua Gan Zang Bing Za Zhi; 2023 Oct; 31(10):1075-1080. PubMed ID: 38016773
[No Abstract] [Full Text] [Related]
8. Noninvasive Detection of HER2 Expression in Gastric Cancer by
Guo X; Zhu H; Zhou N; Chen Z; Liu T; Liu F; Xu X; Jin H; Shen L; Gao J; Yang Z
Mol Pharm; 2018 Nov; 15(11):5174-5182. PubMed ID: 30251865
[TBL] [Abstract][Full Text] [Related]
9. Mapping RNA splicing variations in clinically accessible and nonaccessible tissues to facilitate Mendelian disease diagnosis using RNA-seq.
Aicher JK; Jewell P; Vaquero-Garcia J; Barash Y; Bhoj EJ
Genet Med; 2020 Jul; 22(7):1181-1190. PubMed ID: 32225167
[TBL] [Abstract][Full Text] [Related]
10. ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
Denti L; Rizzi R; Beretta S; Vedova GD; Previtali M; Bonizzoni P
BMC Bioinformatics; 2018 Nov; 19(1):444. PubMed ID: 30458725
[TBL] [Abstract][Full Text] [Related]
11. TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository.
Zhao Y; Li MC; Konaté MM; Chen L; Das B; Karlovich C; Williams PM; Evrard YA; Doroshow JH; McShane LM
J Transl Med; 2021 Jun; 19(1):269. PubMed ID: 34158060
[TBL] [Abstract][Full Text] [Related]
12. Exon-level transcriptome profiling in murine breast cancer reveals splicing changes specific to tumors with different metastatic abilities.
Bemmo A; Dias C; Rose AA; Russo C; Siegel P; Majewski J
PLoS One; 2010 Aug; 5(8):e11981. PubMed ID: 20700505
[TBL] [Abstract][Full Text] [Related]
13. Short amplicon reverse transcription-polymerase chain reaction detects aberrant splicing in genes with low expression in blood missed by ribonucleic acid sequencing analysis for clinical diagnosis.
Wai HA; Constable M; Drewes C; Davies IC; Svobodova E; Dempsey E; Saggar A; Homfray T; Mansour S; Douzgou S; Barr K; Mercer C; Hunt D; Douglas AGL; Baralle D
Hum Mutat; 2022 Jul; 43(7):963-970. PubMed ID: 35476365
[TBL] [Abstract][Full Text] [Related]
14. Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data.
Badr E; ElHefnawi M; Heath LS
PLoS One; 2016; 11(11):e0166978. PubMed ID: 27861625
[TBL] [Abstract][Full Text] [Related]
15. Establishment of Novel Gastric Cancer Patient-Derived Xenografts and Cell Lines: Pathological Comparison between Primary Tumor, Patient-Derived, and Cell-Line Derived Xenografts.
Kuwata T; Yanagihara K; Iino Y; Komatsu T; Ochiai A; Sekine S; Taniguchi H; Katai H; Kinoshita T; Ohtsu A
Cells; 2019 Jun; 8(6):. PubMed ID: 31207870
[TBL] [Abstract][Full Text] [Related]
16. Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
Hu Y; Wang K; Li M
PLoS Comput Biol; 2020 Jun; 16(6):e1007925. PubMed ID: 32502143
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide association between DNA methylation and alternative splicing in an invertebrate.
Flores K; Wolschin F; Corneveaux JJ; Allen AN; Huentelman MJ; Amdam GV
BMC Genomics; 2012 Sep; 13():480. PubMed ID: 22978521
[TBL] [Abstract][Full Text] [Related]
18. RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing.
Margasyuk S; Kalinina M; Petrova M; Skvortsov D; Cao C; Pervouchine DD
RNA; 2023 Sep; 29(9):1423-1436. PubMed ID: 37295923
[TBL] [Abstract][Full Text] [Related]
19. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data.
Shen S; Park JW; Huang J; Dittmar KA; Lu ZX; Zhou Q; Carstens RP; Xing Y
Nucleic Acids Res; 2012 Apr; 40(8):e61. PubMed ID: 22266656
[TBL] [Abstract][Full Text] [Related]
20. BRIE: transcriptome-wide splicing quantification in single cells.
Huang Y; Sanguinetti G
Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]