These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments. Rangwala SH; Rudnev DV; Ananiev VV; Oh DH; Asztalos A; Benica B; Borodin EA; Bouk N; Evgeniev VI; Kodali VK; Lotov V; Mozes E; Omelchenko MV; Savkina S; Sukharnikov E; Virothaisakun J; Murphy TD; Pruitt KD; Schneider VA PLoS Biol; 2024 May; 22(5):e3002405. PubMed ID: 38713717 [TBL] [Abstract][Full Text] [Related]
3. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. Uchiyama I; Higuchi T; Kobayashi I BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155 [TBL] [Abstract][Full Text] [Related]
4. Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). Rangwala SH; Kuznetsov A; Ananiev V; Asztalos A; Borodin E; Evgeniev V; Joukov V; Lotov V; Pannu R; Rudnev D; Shkeda A; Weitz EM; Schneider VA Genome Res; 2021 Jan; 31(1):159-169. PubMed ID: 33239395 [TBL] [Abstract][Full Text] [Related]
6. Comparison of RefSeq protein-coding regions in human and vertebrate genomes. Fong JH; Murphy TD; Pruitt KD BMC Genomics; 2013 Sep; 14():654. PubMed ID: 24063302 [TBL] [Abstract][Full Text] [Related]
7. CGV: Cancer Genome Viewer, a web service for integrative cancer genome and pharmacogenomic data analysis. Choi JH; Choi HS; Cho SH; Lee JH; Woo HG Bioinformatics; 2022 Nov; 38(22):5116-5118. PubMed ID: 36130060 [TBL] [Abstract][Full Text] [Related]
8. FluentDNA: Nucleotide Visualization of Whole Genomes, Annotations, and Alignments. Seaman J; Buggs RJA Front Genet; 2020; 11():292. PubMed ID: 32425967 [TBL] [Abstract][Full Text] [Related]
9. Using the NCBI Map Viewer to browse genomic sequence data. Wolfsberg TG Curr Protoc Hum Genet; 2011 Apr; Chapter 18():Unit18.5. PubMed ID: 21480181 [TBL] [Abstract][Full Text] [Related]
10. Plasticity in Triticeae centromere DNA sequences: a wheat × tall wheatgrass (decaploid) model. Zhao J; Hao W; Tang C; Yao H; Li B; Zheng Q; Li Z; Zhang X Plant J; 2019 Oct; 100(2):314-327. PubMed ID: 31259444 [TBL] [Abstract][Full Text] [Related]
11. Using the NCBI map viewer to browse genomic sequence data. Wolfsberg TG Curr Protoc Bioinformatics; 2010 Mar; Chapter 1():1.5.1-1.5.25. PubMed ID: 20205186 [TBL] [Abstract][Full Text] [Related]
12. GATA: a graphic alignment tool for comparative sequence analysis. Nix DA; Eisen MB BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071 [TBL] [Abstract][Full Text] [Related]
13. Using the NCBI Map Viewer to browse genomic sequence data. Wolfsberg TG Curr Protoc Bioinformatics; 2007 Jan; Chapter 1():Unit 1.5. PubMed ID: 18428781 [TBL] [Abstract][Full Text] [Related]
14. Entrez Gene: gene-centered information at NCBI. Maglott D; Ostell J; Pruitt KD; Tatusova T Nucleic Acids Res; 2007 Jan; 35(Database issue):D26-31. PubMed ID: 17148475 [TBL] [Abstract][Full Text] [Related]
16. iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. Wang J; Youkharibache P; Zhang D; Lanczycki CJ; Geer RC; Madej T; Phan L; Ward M; Lu S; Marchler GH; Wang Y; Bryant SH; Geer LY; Marchler-Bauer A Bioinformatics; 2020 Jan; 36(1):131-135. PubMed ID: 31218344 [TBL] [Abstract][Full Text] [Related]
17. Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission. Geib SM; Hall B; Derego T; Bremer FT; Cannoles K; Sim SB Gigascience; 2018 Apr; 7(4):1-5. PubMed ID: 29635297 [TBL] [Abstract][Full Text] [Related]
18. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Marchler-Bauer A; Panchenko AR; Shoemaker BA; Thiessen PA; Geer LY; Bryant SH Nucleic Acids Res; 2002 Jan; 30(1):281-3. PubMed ID: 11752315 [TBL] [Abstract][Full Text] [Related]
19. GenomeVISTA--an integrated software package for whole-genome alignment and visualization. Poliakov A; Foong J; Brudno M; Dubchak I Bioinformatics; 2014 Sep; 30(18):2654-5. PubMed ID: 24860159 [TBL] [Abstract][Full Text] [Related]
20. Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser. Stenger JE; Xu H; Haynes C; Hauser ER; Pericak-Vance M; Goldschmidt-Clermont PJ; Vance JM BMC Bioinformatics; 2005 Apr; 6():95. PubMed ID: 15826305 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]