BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 38077427)

  • 1. taxalogue: a toolkit to create comprehensive CO1 reference databases.
    Noll NW; Scherber C; Schäffler L
    PeerJ; 2023; 11():e16253. PubMed ID: 38077427
    [TBL] [Abstract][Full Text] [Related]  

  • 2. crabs-A software program to generate curated reference databases for metabarcoding sequencing data.
    Jeunen GJ; Dowle E; Edgecombe J; von Ammon U; Gemmell NJ; Cross H
    Mol Ecol Resour; 2023 Apr; 23(3):725-738. PubMed ID: 36437603
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies.
    Mugnai F; Costantini F; Chenuil A; Leduc M; Gutiérrez Ortega JM; Meglécz E
    PeerJ; 2023; 11():e14616. PubMed ID: 36643652
    [TBL] [Abstract][Full Text] [Related]  

  • 4. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Silliman K; Nielsen S; Gold Z
    Environ DNA; 2024 Jan; 6(1):. PubMed ID: 38370872
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding.
    Arranz V; Pearman WS; Aguirre JD; Liggins L
    Sci Data; 2020 Jul; 7(1):209. PubMed ID: 32620910
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins.
    Magoga G; Forni G; Brunetti M; Meral A; Spada A; De Biase A; Montagna M
    Database (Oxford); 2022 Jul; 2022():. PubMed ID: 35796594
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
    Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T
    BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112
    [TBL] [Abstract][Full Text] [Related]  

  • 8. How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation.
    San Martin G; Hautier L; Mingeot D; Dubois B
    PeerJ; 2024; 12():e16567. PubMed ID: 38313030
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences.
    Balech B; Sandioniggi A; Marzano M; Pesole G; Santamaria M
    Database (Oxford); 2022 Feb; 2022():. PubMed ID: 35134858
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RESCRIPt: Reproducible sequence taxonomy reference database management.
    Robeson MS; O'Rourke DR; Kaehler BD; Ziemski M; Dillon MR; Foster JT; Bokulich NA
    PLoS Comput Biol; 2021 Nov; 17(11):e1009581. PubMed ID: 34748542
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data.
    Dubois B; Debode F; Hautier L; Hulin J; Martin GS; Delvaux A; Janssen E; Mingeot D
    BMC Genom Data; 2022 Jul; 23(1):53. PubMed ID: 35804326
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting.
    Beentjes KK; Speksnijder AGCL; Schilthuizen M; Hoogeveen M; Pastoor R; van der Hoorn BB
    PLoS One; 2019; 14(12):e0226527. PubMed ID: 31841568
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 14. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Nielsen S; Gold Z
    bioRxiv; 2023 Jun; ():. PubMed ID: 37397980
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem.
    Gold Z; Curd EE; Goodwin KD; Choi ES; Frable BW; Thompson AR; Walker HJ; Burton RS; Kacev D; Martz LD; Barber PH
    Mol Ecol Resour; 2021 Oct; 21(7):2546-2564. PubMed ID: 34235858
    [TBL] [Abstract][Full Text] [Related]  

  • 16. COInr and mkCOInr: Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi-automated pipeline.
    Meglécz E
    Mol Ecol Resour; 2023 May; 23(4):933-945. PubMed ID: 36656075
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BCdatabaser: on-the-fly reference database creation for (meta-)barcoding.
    Keller A; Hohlfeld S; Kolter A; Schultz J; Gemeinholzer B; Ankenbrand MJ
    Bioinformatics; 2020 Apr; 36(8):2630-2631. PubMed ID: 31904820
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb.
    Keck F; Altermatt F
    Mol Ecol Resour; 2023 Feb; 23(2):511-518. PubMed ID: 36239541
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.
    Banchi E; Ametrano CG; Greco S; Stanković D; Muggia L; Pallavicini A
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32016319
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
    Tanabe AS; Toju H
    PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.