167 related articles for article (PubMed ID: 38087988)
1. Exploring the conformational dynamics of the SARS-CoV-2 SL4 hairpin by combining optical tweezers and base analogues.
Sundar Rajan V; Wypijewska Del Nogal A; Levin S; Wilhelmsson LM; Westerlund F
Nanoscale; 2024 Jan; 16(2):752-764. PubMed ID: 38087988
[TBL] [Abstract][Full Text] [Related]
2. High-resolution structure of stem-loop 4 from the 5'-UTR of SARS-CoV-2 solved by solution state NMR.
Vögele J; Hymon D; Martins J; Ferner J; Jonker HRA; Hargrove AE; Weigand JE; Wacker A; Schwalbe H; Wöhnert J; Duchardt-Ferner E
Nucleic Acids Res; 2023 Nov; 51(20):11318-11331. PubMed ID: 37791874
[TBL] [Abstract][Full Text] [Related]
3. The bifurcated stem loop 4 (SL4) is crucial for efficient packaging of mouse mammary tumor virus (MMTV) genomic RNA.
Mustafa F; Vivet-Boudou V; Jabeen A; Ali LM; Kalloush RM; Marquet R; Rizvi TA
RNA Biol; 2018; 15(8):1047-1059. PubMed ID: 29929424
[TBL] [Abstract][Full Text] [Related]
4. Stem-loop SL4 of the HIV-1 psi RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition.
Amarasinghe GK; Zhou J; Miskimon M; Chancellor KJ; McDonald JA; Matthews AG; Miller RR; Rouse MD; Summers MF
J Mol Biol; 2001 Dec; 314(5):961-70. PubMed ID: 11743714
[TBL] [Abstract][Full Text] [Related]
5. Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA.
Vögele J; Duchardt-Ferner E; Bains JK; Knezic B; Wacker A; Sich C; Weigand JE; Šponer J; Schwalbe H; Krepl M; Wöhnert J
Nucleic Acids Res; 2024 Jun; 52(11):6687-6706. PubMed ID: 38783391
[TBL] [Abstract][Full Text] [Related]
6. Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry.
Yu E; Fabris D
J Mol Biol; 2003 Jul; 330(2):211-23. PubMed ID: 12823962
[TBL] [Abstract][Full Text] [Related]
7. The application of single-molecule optical tweezers to study disease-related structural dynamics in RNA.
Marinus T; Foster TL; Tych KM
Biochem Soc Trans; 2024 Apr; 52(2):899-909. PubMed ID: 38533854
[TBL] [Abstract][Full Text] [Related]
8. RNA sequence and ligand binding alter conformational profile of SARS-CoV-2 stem loop II motif.
Aldhumani AH; Hossain MI; Fairchild EA; Boesger H; Marino EC; Myers M; Hines JV
Biochem Biophys Res Commun; 2021 Mar; 545():75-80. PubMed ID: 33545635
[TBL] [Abstract][Full Text] [Related]
9. Structural dynamics of single SARS-CoV-2 pseudoknot molecules reveal topologically distinct conformers.
Neupane K; Zhao M; Lyons A; Munshi S; Ileperuma SM; Ritchie DB; Hoffer NQ; Narayan A; Woodside MT
Nat Commun; 2021 Aug; 12(1):4749. PubMed ID: 34362921
[TBL] [Abstract][Full Text] [Related]
10. Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations.
Bottaro S; Bussi G; Lindorff-Larsen K
J Am Chem Soc; 2021 Jun; 143(22):8333-8343. PubMed ID: 34039006
[TBL] [Abstract][Full Text] [Related]
11. NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform.
Amarasinghe GK; De Guzman RN; Turner RB; Summers MF
J Mol Biol; 2000 May; 299(1):145-56. PubMed ID: 10860728
[TBL] [Abstract][Full Text] [Related]
12. Assembly of severe acute respiratory syndrome coronavirus RNA packaging signal into virus-like particles is nucleocapsid dependent.
Hsieh PK; Chang SC; Huang CC; Lee TT; Hsiao CW; Kou YH; Chen IY; Chang CK; Huang TH; Chang MF
J Virol; 2005 Nov; 79(22):13848-55. PubMed ID: 16254320
[TBL] [Abstract][Full Text] [Related]
13. Direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between nucleocapsid protein and RNA stem-loop hairpins of the HIV-1 Psi-recognition element.
Hagan N; Fabris D
Biochemistry; 2003 Sep; 42(36):10736-45. PubMed ID: 12962498
[TBL] [Abstract][Full Text] [Related]
14.
Vögele J; Ferner JP; Altincekic N; Bains JK; Ceylan B; Fürtig B; Grün JT; Hengesbach M; Hohmann KF; Hymon D; Knezic B; Löhr F; Peter SA; Pyper D; Qureshi NS; Richter C; Schlundt A; Schwalbe H; Stirnal E; Sudakov A; Wacker A; Weigand JE; Wirmer-Bartoschek J; Wöhnert J; Duchardt-Ferner E
Biomol NMR Assign; 2021 Oct; 15(2):335-340. PubMed ID: 33928512
[TBL] [Abstract][Full Text] [Related]
15. RBM24 inhibits the translation of SARS-CoV-2 polyproteins by targeting the 5'-untranslated region.
Yao Y; Sun H; Chen Y; Tian L; Huang D; Liu C; Zhou Y; Wang Y; Wen Z; Yang B; Chen X; Pei R
Antiviral Res; 2023 Jan; 209():105478. PubMed ID: 36464077
[TBL] [Abstract][Full Text] [Related]
16. Structure of SL4 RNA from the HIV-1 packaging signal.
Kerwood DJ; Cavaluzzi MJ; Borer PN
Biochemistry; 2001 Dec; 40(48):14518-29. PubMed ID: 11724565
[TBL] [Abstract][Full Text] [Related]
17. Mutagenic analysis of the 3' cis-acting elements of the rubella virus genome.
Chen MH; Frey TK
J Virol; 1999 Apr; 73(4):3386-403. PubMed ID: 10074193
[TBL] [Abstract][Full Text] [Related]
18. Complex Conformational Dynamics of the Heart Failure-Associated Pre-miRNA-377 Hairpin Revealed by Single-Molecule Optical Tweezers.
Wypijewska Del Nogal A; Sundar Rajan V; Westerlund F; Wilhelmsson LM
Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445712
[TBL] [Abstract][Full Text] [Related]
19. HIV-1 integrase binding to genomic RNA 5'-UTR induces local structural changes in vitro and in virio.
Liu S; Koneru PC; Li W; Pathirage C; Engelman AN; Kvaratskhelia M; Musier-Forsyth K
Retrovirology; 2021 Nov; 18(1):37. PubMed ID: 34809662
[TBL] [Abstract][Full Text] [Related]
20. MS3D structural elucidation of the HIV-1 packaging signal.
Yu ET; Hawkins A; Eaton J; Fabris D
Proc Natl Acad Sci U S A; 2008 Aug; 105(34):12248-53. PubMed ID: 18713870
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
