167 related articles for article (PubMed ID: 38087988)
21. Potential Achilles heels of SARS-CoV-2 are best displayed by the base order-dependent component of RNA folding energy.
Zhang C; Forsdyke DR
Comput Biol Chem; 2021 Oct; 94():107570. PubMed ID: 34500325
[TBL] [Abstract][Full Text] [Related]
22. Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation.
Pekarek L; Buck S; Caliskan N
J Vis Exp; 2022 Feb; (180):. PubMed ID: 35225268
[TBL] [Abstract][Full Text] [Related]
23. Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1.
Hagan NA; Fabris D
J Mol Biol; 2007 Jan; 365(2):396-410. PubMed ID: 17070549
[TBL] [Abstract][Full Text] [Related]
24. Affinities of packaging domain loops in HIV-1 RNA for the nucleocapsid protein.
Shubsda MF; Paoletti AC; Hudson BS; Borer PN
Biochemistry; 2002 Apr; 41(16):5276-82. PubMed ID: 11955077
[TBL] [Abstract][Full Text] [Related]
25. Annealing to sequences within the primer binding site loop promotes an HIV-1 RNA conformation favoring RNA dimerization and packaging.
Seif E; Niu M; Kleiman L
RNA; 2013 Oct; 19(10):1384-93. PubMed ID: 23960173
[TBL] [Abstract][Full Text] [Related]
26. Three-dimensional folding of an RNA hairpin required for packaging HIV-1.
Pappalardo L; Kerwood DJ; Pelczer I; Borer PN
J Mol Biol; 1998 Oct; 282(4):801-18. PubMed ID: 9743628
[TBL] [Abstract][Full Text] [Related]
27. Mouse hepatitis virus stem-loop 4 functions as a spacer element required to drive subgenomic RNA synthesis.
Yang D; Liu P; Giedroc DP; Leibowitz J
J Virol; 2011 Sep; 85(17):9199-209. PubMed ID: 21715502
[TBL] [Abstract][Full Text] [Related]
28. RNA structure and packaging signals in the 5' leader region of the human immunodeficiency virus type 1 genome.
Clever JL; Miranda D; Parslow TG
J Virol; 2002 Dec; 76(23):12381-7. PubMed ID: 12414982
[TBL] [Abstract][Full Text] [Related]
29. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.
Amarasinghe GK; De Guzman RN; Turner RB; Chancellor KJ; Wu ZR; Summers MF
J Mol Biol; 2000 Aug; 301(2):491-511. PubMed ID: 10926523
[TBL] [Abstract][Full Text] [Related]
30. Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.
Manfredonia I; Nithin C; Ponce-Salvatierra A; Ghosh P; Wirecki TK; Marinus T; Ogando NS; Snijder EJ; van Hemert MJ; Bujnicki JM; Incarnato D
Nucleic Acids Res; 2020 Dec; 48(22):12436-12452. PubMed ID: 33166999
[TBL] [Abstract][Full Text] [Related]
31. Inhibition of SARS-CoV-2 polymerase by nucleotide analogs from a single-molecule perspective.
Seifert M; Bera SC; van Nies P; Kirchdoerfer RN; Shannon A; Le TT; Meng X; Xia H; Wood JM; Harris LD; Papini FS; Arnold JJ; Almo S; Grove TL; Shi PY; Xiang Y; Canard B; Depken M; Cameron CE; Dulin D
Elife; 2021 Oct; 10():. PubMed ID: 34617885
[TBL] [Abstract][Full Text] [Related]
32. Probing the structural dynamics of proteins and nucleic acids with optical tweezers.
Ritchie DB; Woodside MT
Curr Opin Struct Biol; 2015 Oct; 34():43-51. PubMed ID: 26189090
[TBL] [Abstract][Full Text] [Related]
33. Significant Differences in RNA Structure Destabilization by HIV-1 GagDp6 and NCp7 Proteins.
McCauley MJ; Rouzina I; Li J; Núñez ME; Williams MC
Viruses; 2020 Apr; 12(5):. PubMed ID: 32344834
[TBL] [Abstract][Full Text] [Related]
34. High-Precision Single-Molecule Characterization of the Folding of an HIV RNA Hairpin by Atomic Force Microscopy.
Walder R; Van Patten WJ; Ritchie DB; Montange RK; Miller TW; Woodside MT; Perkins TT
Nano Lett; 2018 Oct; 18(10):6318-6325. PubMed ID: 30234311
[TBL] [Abstract][Full Text] [Related]
35. The RNA Architecture of the SARS-CoV-2 3'-Untranslated Region.
Zhao J; Qiu J; Aryal S; Hackett JL; Wang J
Viruses; 2020 Dec; 12(12):. PubMed ID: 33371200
[TBL] [Abstract][Full Text] [Related]
36. Phosphorescence and optically detected magnetic resonance of HIV-1 nucleocapsid protein complexes with stem-loop sequences of the genomic Psi-recognition element.
Maki AH; Ozarowski A; Misra A; Urbaneja MA; Casas-Finet JR
Biochemistry; 2001 Feb; 40(5):1403-12. PubMed ID: 11170468
[TBL] [Abstract][Full Text] [Related]
37. Intrinsic signal amplification by type III CRISPR-Cas systems provides a sequence-specific SARS-CoV-2 diagnostic.
Santiago-Frangos A; Hall LN; Nemudraia A; Nemudryi A; Krishna P; Wiegand T; Wilkinson RA; Snyder DT; Hedges JF; Cicha C; Lee HH; Graham A; Jutila MA; Taylor MP; Wiedenheft B
Cell Rep Med; 2021 Jun; 2(6):100319. PubMed ID: 34075364
[TBL] [Abstract][Full Text] [Related]
38. Arginine methylation of SARS-Cov-2 nucleocapsid protein regulates RNA binding, its ability to suppress stress granule formation, and viral replication.
Cai T; Yu Z; Wang Z; Liang C; Richard S
J Biol Chem; 2021 Jul; 297(1):100821. PubMed ID: 34029587
[TBL] [Abstract][Full Text] [Related]
39. Structure of the 5' untranslated region in SARS-CoV-2 genome and its specific recognition by innate immune system
Bignon E; Miclot T; Terenzi A; Barone G; Monari A
Chem Commun (Camb); 2022 Feb; 58(13):2176-2179. PubMed ID: 35060977
[TBL] [Abstract][Full Text] [Related]
40. Single-Molecule Mechanical Folding and Unfolding of RNA Hairpins: Effects of Single A-U to A·C Pair Substitutions and Single Proton Binding and Implications for mRNA Structure-Induced -1 Ribosomal Frameshifting.
Yang L; Zhong Z; Tong C; Jia H; Liu Y; Chen G
J Am Chem Soc; 2018 Jul; 140(26):8172-8184. PubMed ID: 29884019
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]