These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

131 related articles for article (PubMed ID: 38088148)

  • 1. Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and
    Dutta N; Sarzynska J; Deb I; Lahiri A
    Phys Chem Chem Phys; 2024 Jan; 26(2):992-999. PubMed ID: 38088148
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides.
    Hudson GA; Bloomingdale RJ; Znosko BM
    RNA; 2013 Nov; 19(11):1474-82. PubMed ID: 24062573
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
    Deb I; Popenda Ł; Sarzyńska J; Małgowska M; Lahiri A; Gdaniec Z; Kierzek R
    Sci Rep; 2019 Nov; 9(1):16278. PubMed ID: 31700156
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The contribution of pseudouridine to stabilities and structure of RNAs.
    Kierzek E; Malgowska M; Lisowiec J; Turner DH; Gdaniec Z; Kierzek R
    Nucleic Acids Res; 2014 Mar; 42(5):3492-501. PubMed ID: 24369424
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides, m(3)Psi and Psi.
    Chui HM; Desaulniers JP; Scaringe SA; Chow CS
    J Org Chem; 2002 Dec; 67(25):8847-54. PubMed ID: 12467398
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide.
    Jolley EA; Znosko BM
    Nucleic Acids Res; 2017 Feb; 45(3):1479-1487. PubMed ID: 28180321
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides.
    Hopfinger MC; Kirkpatrick CC; Znosko BM
    Nucleic Acids Res; 2020 Sep; 48(16):8901-8913. PubMed ID: 32810273
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data.
    Nishida S; Sakuraba S; Asai K; Hamada M
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(5):1645-1655. PubMed ID: 29994069
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
    Xia T; SantaLucia J; Burkard ME; Kierzek R; Schroeder SJ; Jiao X; Cox C; Turner DH
    Biochemistry; 1998 Oct; 37(42):14719-35. PubMed ID: 9778347
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Nearest neighbor parameters for inosine x uridine pairs in RNA duplexes.
    Wright DJ; Rice JL; Yanker DM; Znosko BM
    Biochemistry; 2007 Apr; 46(15):4625-34. PubMed ID: 17378583
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
    Davis AR; Znosko BM
    Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NanoMUD: Profiling of pseudouridine and N1-methylpseudouridine using Oxford Nanopore direct RNA sequencing.
    Zhang Y; Yan H; Wei Z; Hong H; Huang D; Liu G; Qin Q; Rong R; Gao P; Meng J; Ying B
    Int J Biol Macromol; 2024 Jun; 270(Pt 2):132433. PubMed ID: 38759861
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modified Nucleotides and RNA Structure Prediction.
    Varenyk Y; Lorenz R
    Methods Mol Biol; 2024; 2726():169-207. PubMed ID: 38780732
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Nearest-neighbor parameters for 7-deaza-adenosine·uridine base pairs in RNA duplexes.
    Richardson KE; Znosko BM
    RNA; 2016 Jun; 22(6):934-42. PubMed ID: 27099368
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Blind tests of RNA nearest-neighbor energy prediction.
    Chou FC; Kladwang W; Kappel K; Das R
    Proc Natl Acad Sci U S A; 2016 Jul; 113(30):8430-5. PubMed ID: 27402765
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pseudouridine in RNA: what, where, how, and why.
    Charette M; Gray MW
    IUBMB Life; 2000 May; 49(5):341-51. PubMed ID: 10902565
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thermodynamic characterization of RNA duplexes containing naturally occurring 1 x 2 nucleotide internal loops.
    Badhwar J; Karri S; Cass CK; Wunderlich EL; Znosko BM
    Biochemistry; 2007 Dec; 46(50):14715-24. PubMed ID: 18020450
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges.
    Znosko BM; Silvestri SB; Volkman H; Boswell B; Serra MJ
    Biochemistry; 2002 Aug; 41(33):10406-17. PubMed ID: 12173927
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bisulfite and Nanopore Sequencing for Pseudouridine in RNA.
    Burrows CJ; Fleming AM
    Acc Chem Res; 2023 Oct; 56(19):2740-2751. PubMed ID: 37700703
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes.
    Sugimoto N; Nakano S; Katoh M; Matsumura A; Nakamuta H; Ohmichi T; Yoneyama M; Sasaki M
    Biochemistry; 1995 Sep; 34(35):11211-6. PubMed ID: 7545436
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.