BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 38101554)

  • 1. A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions.
    de Isidro-Gómez FP; Vilas JL; Losana P; Carazo JM; Sorzano COS
    J Struct Biol; 2024 Mar; 216(1):108056. PubMed ID: 38101554
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cryo-Electron Tomography and Subtomogram Averaging.
    Wan W; Briggs JA
    Methods Enzymol; 2016; 579():329-67. PubMed ID: 27572733
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cryo-tomography tilt-series alignment with consideration of the beam-induced sample motion.
    Fernandez JJ; Li S; Bharat TAM; Agard DA
    J Struct Biol; 2018 Jun; 202(3):200-209. PubMed ID: 29410148
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Alignment of cryo-electron tomography datasets.
    Amat F; Castaño-Diez D; Lawrence A; Moussavi F; Winkler H; Horowitz M
    Methods Enzymol; 2010; 482():343-67. PubMed ID: 20888968
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated batch fiducial-less tilt-series alignment in Appion using Protomo.
    Noble AJ; Stagg SM
    J Struct Biol; 2015 Nov; 192(2):270-8. PubMed ID: 26455557
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Subtomogram averaging from cryo-electron tomograms.
    Leigh KE; Navarro PP; Scaramuzza S; Chen W; Zhang Y; Castaño-Díez D; Kudryashev M
    Methods Cell Biol; 2019; 152():217-259. PubMed ID: 31326022
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A novel fully automatic scheme for fiducial marker-based alignment in electron tomography.
    Han R; Wang L; Liu Z; Sun F; Zhang F
    J Struct Biol; 2015 Dec; 192(3):403-417. PubMed ID: 26433028
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Markov random field based automatic image alignment for electron tomography.
    Amat F; Moussavi F; Comolli LR; Elidan G; Downing KH; Horowitz M
    J Struct Biol; 2008 Mar; 161(3):260-75. PubMed ID: 17855124
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Marker-free image registration of electron tomography tilt-series.
    Sorzano CO; Messaoudi C; Eibauer M; Bilbao-Castro JR; Hegerl R; Nickell S; Marco S; Carazo JM
    BMC Bioinformatics; 2009 Apr; 10():124. PubMed ID: 19397789
    [TBL] [Abstract][Full Text] [Related]  

  • 10. TomoAlign: A novel approach to correcting sample motion and 3D CTF in CryoET.
    Fernandez JJ; Li S
    J Struct Biol; 2021 Dec; 213(4):107778. PubMed ID: 34416376
    [TBL] [Abstract][Full Text] [Related]  

  • 11. emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging.
    Himes BA; Zhang P
    Nat Methods; 2018 Nov; 15(11):955-961. PubMed ID: 30349041
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Consideration of sample motion in cryo-tomography based on alignment residual interpolation.
    Fernandez JJ; Li S; Agard DA
    J Struct Biol; 2019 Mar; 205(3):1-6. PubMed ID: 30690142
    [TBL] [Abstract][Full Text] [Related]  

  • 13. IPET and FETR: experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure.
    Zhang L; Ren G
    PLoS One; 2012; 7(1):e30249. PubMed ID: 22291925
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series.
    Zeng X; Lin Z; Uddin MR; Zhou B; Cheng C; Zhang J; Freyberg Z; Xu M
    J Comput Biol; 2022 Aug; 29(8):932-941. PubMed ID: 35862434
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging.
    Hagen WJH; Wan W; Briggs JAG
    J Struct Biol; 2017 Feb; 197(2):191-198. PubMed ID: 27313000
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Alignator: a GPU powered software package for robust fiducial-less alignment of cryo tilt-series.
    Castaño-Díez D; Scheffer M; Al-Amoudi A; Frangakis AS
    J Struct Biol; 2010 Apr; 170(1):117-26. PubMed ID: 20117216
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ghostbuster: A phase retrieval diffraction tomography algorithm for cryo-EM.
    Yeo J; Daurer BJ; Kimanius D; Balakrishnan D; Bepler T; Tan YZ; Loh ND
    Ultramicroscopy; 2024 Aug; 262():113962. PubMed ID: 38642481
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational resources for cryo-electron tomography in Bsoft.
    Heymann JB; Cardone G; Winkler DC; Steven AC
    J Struct Biol; 2008 Mar; 161(3):232-42. PubMed ID: 17869539
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
    Castaño-Díez D; Kudryashev M; Stahlberg H
    J Struct Biol; 2017 Feb; 197(2):135-144. PubMed ID: 27288866
    [TBL] [Abstract][Full Text] [Related]  

  • 20. In Situ Structure Determination of Bacterial Surface Nanomachines Using Cryo-Electron Tomography.
    Lai L; Cheung YW; Martinez M; Kixmoeller K; Palao L; Steimle S; Ho MC; Black BE; Lai EM; Chang YW
    Methods Mol Biol; 2023; 2646():211-248. PubMed ID: 36842118
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.