151 related articles for article (PubMed ID: 38102591)
1. A comprehensive assessment of exome capture methods for RNA sequencing of formalin-fixed and paraffin-embedded samples.
Zong L; Zhu Y; Jiang Y; Xia Y; Liu Q; Jiang S
BMC Genomics; 2023 Dec; 24(1):777. PubMed ID: 38102591
[TBL] [Abstract][Full Text] [Related]
2. RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples.
Song K; Elboudwarej E; Zhao X; Zhuo L; Pan D; Liu J; Brachmann C; Patterson SD; Yoon OK; Zavodovskaya M
PLoS One; 2023; 18(10):e0293400. PubMed ID: 37883360
[TBL] [Abstract][Full Text] [Related]
3. Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Webster AF; Zumbo P; Fostel J; Gandara J; Hester SD; Recio L; Williams A; Wood CE; Yauk CL; Mason CE
Toxicol Sci; 2015 Dec; 148(2):460-72. PubMed ID: 26361796
[TBL] [Abstract][Full Text] [Related]
4. Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.
Jackson AF; Williams A; Moffat I; Phillips SL; Recio L; Waters MD; Lambert IB; Yauk CL
J Pharmacol Toxicol Methods; 2013; 68(2):260-268. PubMed ID: 23458726
[TBL] [Abstract][Full Text] [Related]
5. Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
Zhao W; He X; Hoadley KA; Parker JS; Hayes DN; Perou CM
BMC Genomics; 2014 Jun; 15(1):419. PubMed ID: 24888378
[TBL] [Abstract][Full Text] [Related]
6. Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples.
Bonfiglio S; Vanni I; Rossella V; Truini A; Lazarevic D; Dal Bello MG; Alama A; Mora M; Rijavec E; Genova C; Cittaro D; Grossi F; Coco S
BMC Cancer; 2016 Aug; 16(1):692. PubMed ID: 27578032
[TBL] [Abstract][Full Text] [Related]
7. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue.
Jang JS; Holicky E; Lau J; McDonough S; Mutawe M; Koster MJ; Warrington KJ; Cuninngham JM
BMC Genomics; 2021 Oct; 22(1):759. PubMed ID: 34689749
[TBL] [Abstract][Full Text] [Related]
8. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L
PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701
[TBL] [Abstract][Full Text] [Related]
9. RNA Extraction Method Impacts Quality Metrics and Sequencing Results in Formalin-Fixed, Paraffin-Embedded Tissue Samples.
Decruyenaere P; Verniers K; Poma-Soto F; Van Dorpe J; Offner F; Vandesompele J
Lab Invest; 2023 Feb; 103(2):100027. PubMed ID: 37039153
[TBL] [Abstract][Full Text] [Related]
10. Generating Exome Enriched Sequencing Libraries from Formalin-Fixed, Paraffin-Embedded Tissue DNA for Next-Generation Sequencing.
Marosy BA; Craig BD; Hetrick KN; Witmer PD; Ling H; Griffith SM; Myers B; Ostrander EA; Stanford JL; Brody LC; Doheny KF
Curr Protoc Hum Genet; 2017 Jan; 92():18.10.1-18.10.25. PubMed ID: 28075488
[TBL] [Abstract][Full Text] [Related]
11. MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples.
Mattesen TB; Andersen CL; Bramsen JB
Clin Epigenetics; 2021 Jan; 13(1):20. PubMed ID: 33509261
[TBL] [Abstract][Full Text] [Related]
12. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.
Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
BMC Cancer; 2019 Dec; 19(1):1189. PubMed ID: 31805884
[TBL] [Abstract][Full Text] [Related]
13. High-throughput single nucleus total RNA sequencing of formalin-fixed paraffin-embedded tissues by snRandom-seq.
Xu Z; Zhang T; Chen H; Zhu Y; Lv Y; Zhang S; Chen J; Chen H; Yang L; Jiang W; Ni S; Lu F; Wang Z; Yang H; Dong L; Chen F; Zhang H; Chen Y; Liu J; Zhang D; Fan L; Guo G; Wang Y
Nat Commun; 2023 May; 14(1):2734. PubMed ID: 37173341
[TBL] [Abstract][Full Text] [Related]
14. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.
Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ
PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257
[TBL] [Abstract][Full Text] [Related]
15. Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue.
Jovanović B; Sheng Q; Seitz RS; Lawrence KD; Morris SW; Thomas LR; Hout DR; Schweitzer BL; Guo Y; Pietenpol JA; Lehmann BD
BMC Cancer; 2017 Apr; 17(1):241. PubMed ID: 28376728
[TBL] [Abstract][Full Text] [Related]
16. Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST).
Astolfi A; Urbini M; Indio V; Nannini M; Genovese CG; Santini D; Saponara M; Mandrioli A; Ercolani G; Brandi G; Biasco G; Pantaleo MA
BMC Genomics; 2015 Nov; 16():892. PubMed ID: 26531060
[TBL] [Abstract][Full Text] [Related]
17. Editor's Highlight: Dose-Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded Samples.
Hester SD; Bhat V; Chorley BN; Carswell G; Jones W; Wehmas LC; Wood CE
Toxicol Sci; 2016 Dec; 154(2):202-213. PubMed ID: 27562560
[TBL] [Abstract][Full Text] [Related]
18. FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples.
Vahrenkamp JM; Szczotka K; Dodson MK; Jarboe EA; Soisson AP; Gertz J
Genome Res; 2019 Nov; 29(11):1826-1835. PubMed ID: 31649055
[TBL] [Abstract][Full Text] [Related]
19. Fusion transcript discovery using RNA sequencing in formalin-fixed paraffin-embedded specimen.
Talebi A; Thiery JP; Kerachian MA
Crit Rev Oncol Hematol; 2021 Apr; 160():103303. PubMed ID: 33757837
[TBL] [Abstract][Full Text] [Related]
20. Systematic evaluation of RNA quality, microarray data reliability and pathway analysis in fresh, fresh frozen and formalin-fixed paraffin-embedded tissue samples.
Wimmer I; Tröscher AR; Brunner F; Rubino SJ; Bien CG; Weiner HL; Lassmann H; Bauer J
Sci Rep; 2018 Apr; 8(1):6351. PubMed ID: 29679021
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
