These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

210 related articles for article (PubMed ID: 38123557)

  • 1. Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.
    Bittremieux W; Avalon NE; Thomas SP; Kakhkhorov SA; Aksenov AA; Gomes PWP; Aceves CM; Caraballo-Rodríguez AM; Gauglitz JM; Gerwick WH; Huan T; Jarmusch AK; Kaddurah-Daouk RF; Kang KB; Kim HW; Kondić T; Mannochio-Russo H; Meehan MJ; Melnik AV; Nothias LF; O'Donovan C; Panitchpakdi M; Petras D; Schmid R; Schymanski EL; van der Hooft JJJ; Weldon KC; Yang H; Xing S; Zemlin J; Wang M; Dorrestein PC
    Nat Commun; 2023 Dec; 14(1):8488. PubMed ID: 38123557
    [TBL] [Abstract][Full Text] [Related]  

  • 2. [A novel method for efficient screening and annotation of important pathway-associated metabolites based on the modified metabolome and probe molecules].
    Li Z; Zheng F; Xia Y; Zhang X; Wang X; Zhao C; Zhao X; Lu X; Xu G
    Se Pu; 2022 Sep; 40(9):788-796. PubMed ID: 36156625
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The critical role that spectral libraries play in capturing the metabolomics community knowledge.
    Bittremieux W; Wang M; Dorrestein PC
    Metabolomics; 2022 Nov; 18(12):94. PubMed ID: 36409434
    [TBL] [Abstract][Full Text] [Related]  

  • 4. compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.
    Edmands WM; Petrick L; Barupal DK; Scalbert A; Wilson MJ; Wickliffe JK; Rappaport SM
    Anal Chem; 2017 Apr; 89(7):3919-3928. PubMed ID: 28225587
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Propagating annotations of molecular networks using in silico fragmentation.
    da Silva RR; Wang M; Nothias LF; van der Hooft JJJ; Caraballo-Rodríguez AM; Fox E; Balunas MJ; Klassen JL; Lopes NP; Dorrestein PC
    PLoS Comput Biol; 2018 Apr; 14(4):e1006089. PubMed ID: 29668671
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Suspect screening and untargeted analysis of veterinary drugs in food by LC-HRMS: Application of background exclusion-dependent acquisition for retrospective analysis of unknown xenobiotics.
    Zhu C; Lai G; Jin Y; Xu D; Chen J; Jiang X; Wang S; Liu G; Xu N; Shen R; Wang L; Zhu M; Wu C
    J Pharm Biomed Anal; 2022 Feb; 210():114583. PubMed ID: 35033942
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Reproducible molecular networking of untargeted mass spectrometry data using GNPS.
    Aron AT; Gentry EC; McPhail KL; Nothias LF; Nothias-Esposito M; Bouslimani A; Petras D; Gauglitz JM; Sikora N; Vargas F; van der Hooft JJJ; Ernst M; Kang KB; Aceves CM; Caraballo-Rodríguez AM; Koester I; Weldon KC; Bertrand S; Roullier C; Sun K; Tehan RM; Boya P CA; Christian MH; Gutiérrez M; Ulloa AM; Tejeda Mora JA; Mojica-Flores R; Lakey-Beitia J; Vásquez-Chaves V; Zhang Y; Calderón AI; Tayler N; Keyzers RA; Tugizimana F; Ndlovu N; Aksenov AA; Jarmusch AK; Schmid R; Truman AW; Bandeira N; Wang M; Dorrestein PC
    Nat Protoc; 2020 Jun; 15(6):1954-1991. PubMed ID: 32405051
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Structure-Guided Molecular Network Strategy for Global Untargeted Metabolomics Data Annotation.
    Wang X; Li C; Li Z; Qi Y; Zhang X; Zhao X; Zhao C; Lin X; Lu X; Xu G
    Anal Chem; 2023 Aug; 95(31):11603-11612. PubMed ID: 37493263
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow.
    Chen G; Walmsley S; Cheung GCM; Chen L; Cheng CY; Beuerman RW; Wong TY; Zhou L; Choi H
    Anal Chem; 2017 May; 89(9):4897-4906. PubMed ID: 28391692
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Public LC-Orbitrap Tandem Mass Spectral Library for Metabolite Identification.
    Phapale P; Palmer A; Gathungu RM; Kale D; Brügger B; Alexandrov T
    J Proteome Res; 2021 Apr; 20(4):2089-2097. PubMed ID: 33529026
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Retrieving and Utilizing Hypothetical Neutral Losses from Tandem Mass Spectra for Spectral Similarity Analysis and Unknown Metabolite Annotation.
    Xing S; Hu Y; Yin Z; Liu M; Tang X; Fang M; Huan T
    Anal Chem; 2020 Nov; 92(21):14476-14483. PubMed ID: 33076659
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metabolic reaction network-based recursive metabolite annotation for untargeted metabolomics.
    Shen X; Wang R; Xiong X; Yin Y; Cai Y; Ma Z; Liu N; Zhu ZJ
    Nat Commun; 2019 Apr; 10(1):1516. PubMed ID: 30944337
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics.
    Domingo-Almenara X; Montenegro-Burke JR; Guijas C; Majumder EL; Benton HP; Siuzdak G
    Anal Chem; 2019 Mar; 91(5):3246-3253. PubMed ID: 30681830
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships.
    Huber F; Ridder L; Verhoeven S; Spaaks JH; Diblen F; Rogers S; van der Hooft JJJ
    PLoS Comput Biol; 2021 Feb; 17(2):e1008724. PubMed ID: 33591968
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Enhancing untargeted metabolomics using metadata-based source annotation.
    Gauglitz JM; West KA; Bittremieux W; Williams CL; Weldon KC; Panitchpakdi M; Di Ottavio F; Aceves CM; Brown E; Sikora NC; Jarmusch AK; Martino C; Tripathi A; Meehan MJ; Dorrestein K; Shaffer JP; Coras R; Vargas F; Goldasich LD; Schwartz T; Bryant M; Humphrey G; Johnson AJ; Spengler K; Belda-Ferre P; Diaz E; McDonald D; Zhu Q; Elijah EO; Wang M; Marotz C; Sprecher KE; Vargas-Robles D; Withrow D; Ackermann G; Herrera L; Bradford BJ; Marques LMM; Amaral JG; Silva RM; Veras FP; Cunha TM; Oliveira RDR; Louzada-Junior P; Mills RH; Piotrowski PK; Servetas SL; Da Silva SM; Jones CM; Lin NJ; Lippa KA; Jackson SA; Daouk RK; Galasko D; Dulai PS; Kalashnikova TI; Wittenberg C; Terkeltaub R; Doty MM; Kim JH; Rhee KE; Beauchamp-Walters J; Wright KP; Dominguez-Bello MG; Manary M; Oliveira MF; Boland BS; Lopes NP; Guma M; Swafford AD; Dutton RJ; Knight R; Dorrestein PC
    Nat Biotechnol; 2022 Dec; 40(12):1774-1779. PubMed ID: 35798960
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Deep Learning Based Metabolite Annotation.
    Chau HYK; Ao H; Zhang X; Gao S; Varghese RS; Ressom HW
    Annu Int Conf IEEE Eng Med Biol Soc; 2023 Jul; 2023():1-4. PubMed ID: 38082953
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MetFID: artificial neural network-based compound fingerprint prediction for metabolite annotation.
    Fan Z; Alley A; Ghaffari K; Ressom HW
    Metabolomics; 2020 Sep; 16(10):104. PubMed ID: 32997169
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic networking.
    Zhou Z; Luo M; Zhang H; Yin Y; Cai Y; Zhu ZJ
    Nat Commun; 2022 Nov; 13(1):6656. PubMed ID: 36333358
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Significance estimation for large scale metabolomics annotations by spectral matching.
    Scheubert K; Hufsky F; Petras D; Wang M; Nothias LF; Dührkop K; Bandeira N; Dorrestein PC; Böcker S
    Nat Commun; 2017 Nov; 8(1):1494. PubMed ID: 29133785
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metabolomic spectral libraries for data-independent SWATH liquid chromatography mass spectrometry acquisition.
    Bruderer T; Varesio E; Hidasi AO; Duchoslav E; Burton L; Bonner R; Hopfgartner G
    Anal Bioanal Chem; 2018 Mar; 410(7):1873-1884. PubMed ID: 29411086
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.