These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 38124369)

  • 1. A Perspective on the Prospective Use of AI in Protein Structure Prediction.
    Versini R; Sritharan S; Aykac Fas B; Tubiana T; Aimeur SZ; Henri J; Erard M; Nüsse O; Andreani J; Baaden M; Fuchs P; Galochkina T; Chatzigoulas A; Cournia Z; Santuz H; Sacquin-Mora S; Taly A
    J Chem Inf Model; 2024 Jan; 64(1):26-41. PubMed ID: 38124369
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
    Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
    Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
    [TBL] [Abstract][Full Text] [Related]  

  • 3. AlphaFold2 models indicate that protein sequence determines both structure and dynamics.
    Guo HB; Perminov A; Bekele S; Kedziora G; Farajollahi S; Varaljay V; Hinkle K; Molinero V; Meister K; Hung C; Dennis P; Kelley-Loughnane N; Berry R
    Sci Rep; 2022 Jun; 12(1):10696. PubMed ID: 35739160
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AlphaFold2 modeling and molecular dynamics simulations of an intrinsically disordered protein.
    Guo HB; Huntington B; Perminov A; Smith K; Hastings N; Dennis P; Kelley-Loughnane N; Berry R
    PLoS One; 2024; 19(5):e0301866. PubMed ID: 38739602
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.
    Li EH; Spaman LE; Tejero R; Janet Huang Y; Ramelot TA; Fraga KJ; Prestegard JH; Kennedy MA; Montelione GT
    J Magn Reson; 2023 Jul; 352():107481. PubMed ID: 37257257
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessing AF2's ability to predict structural ensembles of proteins.
    Riccabona JR; Spoendlin FC; Fischer AM; Loeffler JR; Quoika PK; Jenkins TP; Ferguson JA; Smorodina E; Laustsen AH; Greiff V; Forli S; Ward AB; Deane CM; Fernández-Quintero ML
    Structure; 2024 Nov; 32(11):2147-2159.e2. PubMed ID: 39332396
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The Origin of Discrepancies between Predictions and Annotations in Intrinsically Disordered Proteins.
    Pajkos M; Erdős G; Dosztányi Z
    Biomolecules; 2023 Sep; 13(10):. PubMed ID: 37892124
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assessment of AlphaFold2 for Human Proteins via Residue Solvent Exposure.
    Bæk KT; Kepp KP
    J Chem Inf Model; 2022 Jul; 62(14):3391-3400. PubMed ID: 35785970
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AlphaFold2: A Role for Disordered Protein/Region Prediction?
    Wilson CJ; Choy WY; Karttunen M
    Int J Mol Sci; 2022 Apr; 23(9):. PubMed ID: 35562983
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reliability of AlphaFold2 Models in Virtual Drug Screening: A Focus on Selected Class A GPCRs.
    Alhumaid NK; Tawfik EA
    Int J Mol Sci; 2024 Sep; 25(18):. PubMed ID: 39337622
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AlphaFold2
    Chang L; Perez A
    bioRxiv; 2024 Aug; ():. PubMed ID: 39253449
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry.
    Manalastas-Cantos K; Adoni KR; Pfeifer M; Märtens B; Grünewald K; Thalassinos K; Topf M
    Mol Cell Proteomics; 2024 Mar; 23(3):100724. PubMed ID: 38266916
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Random, de novo, and conserved proteins: How structure and disorder predictors perform differently.
    Middendorf L; Eicholt LA
    Proteins; 2024 Jun; 92(6):757-767. PubMed ID: 38226524
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AlphaFold, Artificial Intelligence (AI), and Allostery.
    Nussinov R; Zhang M; Liu Y; Jang H
    J Phys Chem B; 2022 Sep; 126(34):6372-6383. PubMed ID: 35976160
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structures prediction and replica exchange molecular dynamics simulations of α-synuclein: A case study for intrinsically disordered proteins.
    Coskuner-Weber O
    Int J Biol Macromol; 2024 Sep; 276(Pt 1):133813. PubMed ID: 38996889
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Overview of AlphaFold2 and breakthroughs in overcoming its limitations.
    Wang L; Wen Z; Liu SW; Zhang L; Finley C; Lee HJ; Fan HS
    Comput Biol Med; 2024 Jun; 176():108620. PubMed ID: 38761500
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2.
    Gaudreault F; Corbeil CR; Sulea T
    Sci Rep; 2023 Sep; 13(1):15107. PubMed ID: 37704686
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK.
    Ohnuki J; Okazaki KI
    J Phys Chem B; 2024 Aug; 128(31):7530-7537. PubMed ID: 39066727
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sampling alternative conformational states of transporters and receptors with AlphaFold2.
    Del Alamo D; Sala D; Mchaourab HS; Meiler J
    Elife; 2022 Mar; 11():. PubMed ID: 35238773
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.