122 related articles for article (PubMed ID: 38134421)
1. CellularPotts.jl: simulating multiscale cellular models in Julia.
Gregg RW; Benos PV
Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38134421
[TBL] [Abstract][Full Text] [Related]
2. HyperGraphs.jl: representing higher-order relationships in Julia.
Diaz LPM; Stumpf MPH
Bioinformatics; 2022 Jul; 38(14):3660-3661. PubMed ID: 35674360
[TBL] [Abstract][Full Text] [Related]
3. MomentClosure.jl: automated moment closure approximations in Julia.
Sukys A; Grima R
Bioinformatics; 2021 Dec; 38(1):289-290. PubMed ID: 34170295
[TBL] [Abstract][Full Text] [Related]
4. SBMLToolkit.jl: a Julia package for importing SBML into the SciML ecosystem.
Lang PF; Jain A; Rackauckas C
J Integr Bioinform; 2024 May; ():. PubMed ID: 38801698
[TBL] [Abstract][Full Text] [Related]
5. BioStructures.jl: read, write and manipulate macromolecular structures in Julia.
Greener JG; Selvaraj J; Ward BJ
Bioinformatics; 2020 Aug; 36(14):4206-4207. PubMed ID: 32407511
[TBL] [Abstract][Full Text] [Related]
6. BondGraphs.jl: composable energy-based modelling in systems biology.
Forrest J; Rajagopal V; Stumpf MPH; Pan M
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37725363
[TBL] [Abstract][Full Text] [Related]
7. GeneticsMakie.jl: a versatile and scalable toolkit for visualizing locus-level genetic and genomic data.
Kim M; Vo DD; Kumagai ME; Jops CT; Gandal MJ
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36495218
[TBL] [Abstract][Full Text] [Related]
8. DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.
Fu X; Zhou X; Gu D; Cao Z; Grima R
Bioinformatics; 2022 Sep; 38(17):4243-4245. PubMed ID: 35799359
[TBL] [Abstract][Full Text] [Related]
9. BioCCP.jl: collecting coupons in combinatorial biotechnology.
Van Huffel K; Stock M; De Baets B
Bioinformatics; 2022 Jan; 38(4):1144-1145. PubMed ID: 34788379
[TBL] [Abstract][Full Text] [Related]
10. BioProfiling.jl: profiling biological perturbations with high-content imaging in single cells and heterogeneous populations.
Vulliard L; Hancock J; Kamnev A; Fell CW; Ferreira da Silva J; Loizou JI; Nagy V; Dupré L; Menche J
Bioinformatics; 2022 Mar; 38(6):1692-1699. PubMed ID: 34935929
[TBL] [Abstract][Full Text] [Related]
11. DistributedFBA.jl: high-level, high-performance flux balance analysis in Julia.
Heirendt L; Thiele I; Fleming RMT
Bioinformatics; 2017 May; 33(9):1421-1423. PubMed ID: 28453682
[TBL] [Abstract][Full Text] [Related]
12. COBREXA.jl: constraint-based reconstruction and exascale analysis.
Kratochvíl M; Heirendt L; Wilken SE; Pusa T; Arreckx S; Noronha A; van Aalst M; Satagopam VP; Ebenhöh O; Schneider R; Trefois C; Gu W
Bioinformatics; 2022 Jan; 38(4):1171-1172. PubMed ID: 34791064
[TBL] [Abstract][Full Text] [Related]
13. Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models.
Pradelli F; Minervini G; Tosatto SCE
Bioinformatics; 2022 Sep; 38(18):4440-4441. PubMed ID: 35876789
[TBL] [Abstract][Full Text] [Related]
14. Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
Agmon E; Spangler RK; Skalnik CJ; Poole W; Peirce SM; Morrison JH; Covert MW
Bioinformatics; 2022 Mar; 38(7):1972-1979. PubMed ID: 35134830
[TBL] [Abstract][Full Text] [Related]
15. BioSimulator.jl: Stochastic simulation in Julia.
Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
[TBL] [Abstract][Full Text] [Related]
16. J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments.
Angaroni F; Guidi A; Ascolani G; d'Onofrio A; Antoniotti M; Graudenzi A
BMC Bioinformatics; 2022 Jul; 23(1):269. PubMed ID: 35804300
[TBL] [Abstract][Full Text] [Related]
17. Finding motifs using DNA images derived from sparse representations.
Chu SK; Stormo GD
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37294804
[TBL] [Abstract][Full Text] [Related]
18. NetworkDynamics.jl-Composing and simulating complex networks in Julia.
Lindner M; Lincoln L; Drauschke F; Koulen JM; Würfel H; Plietzsch A; Hellmann F
Chaos; 2021 Jun; 31(6):063133. PubMed ID: 34241293
[TBL] [Abstract][Full Text] [Related]
19. MIToS.jl: mutual information tools for protein sequence analysis in the Julia language.
Zea DJ; Anfossi D; Nielsen M; Marino-Buslje C
Bioinformatics; 2017 Feb; 33(4):564-565. PubMed ID: 27797756
[TBL] [Abstract][Full Text] [Related]
20. Biomedical image augmentation using Augmentor.
Bloice MD; Roth PM; Holzinger A
Bioinformatics; 2019 Nov; 35(21):4522-4524. PubMed ID: 30989173
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]