BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

121 related articles for article (PubMed ID: 38143859)

  • 1. Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of
    Olivier SA; Bull MK; Strube ML; Murphy R; Ross T; Bowman JP; Chapman B
    Front Microbiol; 2023; 14():1290756. PubMed ID: 38143859
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the 
    Cuscó A; Catozzi C; Viñes J; Sanchez A; Francino O
    F1000Res; 2018; 7():1755. PubMed ID: 30815250
    [No Abstract]   [Full Text] [Related]  

  • 3. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
    Seol D; Lim JS; Sung S; Lee YH; Jeong M; Cho S; Kwak W; Kim H
    Microbiol Spectr; 2022 Apr; 10(2):e0201721. PubMed ID: 35352997
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons.
    Rozas M; Brillet F; Callewaert C; Paetzold B
    Front Cell Infect Microbiol; 2021; 11():806476. PubMed ID: 35071053
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer.
    Benítez-Páez A; Portune KJ; Sanz Y
    Gigascience; 2016; 5():4. PubMed ID: 26823973
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S-ITS-23S rRNA operon.
    Martijn J; Lind AE; Schön ME; Spiertz I; Juzokaite L; Bunikis I; Pettersson OV; Ettema TJG
    Environ Microbiol; 2019 Jul; 21(7):2485-2498. PubMed ID: 31012228
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Impact of Bead-Beating Intensity on the Genus- and Species-Level Characterization of the Gut Microbiome Using Amplicon and Complete 16S rRNA Gene Sequencing.
    Zhang B; Brock M; Arana C; Dende C; van Oers NS; Hooper LV; Raj P
    Front Cell Infect Microbiol; 2021; 11():678522. PubMed ID: 34660333
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metataxonomic insights in the distribution of Lactobacillaceae in foods and food environments.
    Parente E; Zotta T; Giavalisco M; Ricciardi A
    Int J Food Microbiol; 2023 Apr; 391-393():110124. PubMed ID: 36841075
    [TBL] [Abstract][Full Text] [Related]  

  • 10. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
    Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
    BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples.
    Barb JJ; Oler AJ; Kim HS; Chalmers N; Wallen GR; Cashion A; Munson PJ; Ames NJ
    PLoS One; 2016; 11(2):e0148047. PubMed ID: 26829716
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
    Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
    mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer.
    Benítez-Páez A; Sanz Y
    Gigascience; 2017 Jul; 6(7):1-12. PubMed ID: 28605506
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling.
    Fuks G; Elgart M; Amir A; Zeisel A; Turnbaugh PJ; Soen Y; Shental N
    Microbiome; 2018 Jan; 6(1):17. PubMed ID: 29373999
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
    Allen HK; Bayles DO; Looft T; Trachsel J; Bass BE; Alt DP; Bearson SM; Nicholson T; Casey TA
    BMC Res Notes; 2016 Aug; 9():380. PubMed ID: 27485508
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer.
    Kilianski A; Haas JL; Corriveau EJ; Liem AT; Willis KL; Kadavy DR; Rosenzweig CN; Minot SS
    Gigascience; 2015; 4():12. PubMed ID: 25815165
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
    Dacey DP; Chain FJJ
    BMC Bioinformatics; 2021 Oct; 22(1):493. PubMed ID: 34641782
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
    Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
    Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
    Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
    BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
    Zhang T; Li H; Ma S; Cao J; Liao H; Huang Q; Chen W
    Appl Environ Microbiol; 2023 Oct; 89(10):e0060523. PubMed ID: 37800969
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.