235 related articles for article (PubMed ID: 38160301)
1. Potential to Enhance Large Scale Molecular Assessments of Skin Photoaging through Virtual Inference of Spatial Transcriptomics from Routine Staining.
Srinivasan G; Davis MJ; LeBoeuf MR; Fatemi M; Azher ZL; Lu Y; Diallo AB; Saldias Montivero MK; Kolling FW; Perrard L; Salas LA; Christensen BC; Palys TJ; Karagas MR; Palisoul SM; Tsongalis GJ; Vaickus LJ; Preum SM; Levy JJ
Pac Symp Biocomput; 2024; 29():477-491. PubMed ID: 38160301
[TBL] [Abstract][Full Text] [Related]
2. Potential to Enhance Large Scale Molecular Assessments of Skin Photoaging through Virtual Inference of Spatial Transcriptomics from Routine Staining.
Srinivasan G; Davis M; LeBoeuf M; Fatemi M; Azher Z; Lu Y; Diallo A; Montivero MS; Kolling F; Perrard L; Salas L; Christensen B; Palisoul S; Tsongalis G; Vaickus L; Preum S; Levy J
bioRxiv; 2023 Jul; ():. PubMed ID: 37577612
[TBL] [Abstract][Full Text] [Related]
3. Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
Fatemi M; Feng E; Sharma C; Azher Z; Goel T; Ramwala O; Palisoul SM; Barney RE; Perreard L; Kolling FW; Salas LA; Christensen BC; Tsongalis GJ; Vaickus LJ; Levy JJ
J Pathol Inform; 2023; 14():100308. PubMed ID: 37114077
[TBL] [Abstract][Full Text] [Related]
4. The Overlooked Role of Specimen Preparation in Bolstering Deep Learning-Enhanced Spatial Transcriptomics Workflows.
Fatemi MY; Lu Y; Diallo AB; Srinivasan G; Azher ZL; Christensen BC; Salas LA; Tsongalis GJ; Palisoul SM; Perreard L; Kolling FW; Vaickus LJ; Levy JJ
medRxiv; 2023 Oct; ():. PubMed ID: 37873287
[TBL] [Abstract][Full Text] [Related]
5. Nextflow pipeline for Visium and H&E data from patient-derived xenograft samples.
Domanskyi S; Srivastava A; Kaster J; Li H; Herlyn M; Rubinstein JC; Chuang JH
Cell Rep Methods; 2024 May; 4(5):100759. PubMed ID: 38626768
[TBL] [Abstract][Full Text] [Related]
6. Spatial Transcriptomics in Kidney Tissue.
Raghubar AM; Crawford J; Jones K; Lam PY; Andersen SB; Matigian NA; Ng MSY; Healy H; Kassianos AJ; Mallett AJ
Methods Mol Biol; 2023; 2664():233-282. PubMed ID: 37423994
[TBL] [Abstract][Full Text] [Related]
7. Computational exploration of cellular communication in skin from emerging single-cell and spatial transcriptomic data.
Jin S; Ramos R
Biochem Soc Trans; 2022 Feb; 50(1):297-308. PubMed ID: 35191953
[TBL] [Abstract][Full Text] [Related]
8. Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear.
Ruoss S; Esparza MC; Vasquez-Bolanos LS; Nasamran CA; Fisch KM; Engler AJ; Ward SR
J Orthop Surg Res; 2022 Oct; 17(1):440. PubMed ID: 36195913
[TBL] [Abstract][Full Text] [Related]
9. Computational solutions for spatial transcriptomics.
Kleino I; Frolovaitė P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
10. Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity.
Fatemi MY; Lu Y; Sharma C; Feng E; Azher ZL; Diallo AB; Srinivasan G; Rosner GM; Pointer KB; Christensen BC; Salas LA; Tsongalis GJ; Palisoul SM; Perreard L; Kolling FW; Vaickus LJ; Levy JJ
medRxiv; 2023 Oct; ():. PubMed ID: 37873186
[TBL] [Abstract][Full Text] [Related]
11. SPASCER: spatial transcriptomics annotation at single-cell resolution.
Fan Z; Luo Y; Lu H; Wang T; Feng Y; Zhao W; Kim P; Zhou X
Nucleic Acids Res; 2023 Jan; 51(D1):D1138-D1149. PubMed ID: 36243975
[TBL] [Abstract][Full Text] [Related]
12. Use of Deep Learning to Develop and Analyze Computational Hematoxylin and Eosin Staining of Prostate Core Biopsy Images for Tumor Diagnosis.
Rana A; Lowe A; Lithgow M; Horback K; Janovitz T; Da Silva A; Tsai H; Shanmugam V; Bayat A; Shah P
JAMA Netw Open; 2020 May; 3(5):e205111. PubMed ID: 32432709
[TBL] [Abstract][Full Text] [Related]
13. Reliable Gene Expression Profiling from Small and Hematoxylin and Eosin-Stained Clinical Formalin-Fixed, Paraffin-Embedded Specimens Using the HTG EdgeSeq Platform.
Qi Z; Wang L; Desai K; Cogswell J; Stern M; Lawson B; Kerkar SP; Vitazka P
J Mol Diagn; 2019 Sep; 21(5):796-807. PubMed ID: 31255795
[TBL] [Abstract][Full Text] [Related]
14. Multi-institutional comparison of whole slide digital imaging and optical microscopy for interpretation of hematoxylin-eosin-stained breast tissue sections.
Krishnamurthy S; Mathews K; McClure S; Murray M; Gilcrease M; Albarracin C; Spinosa J; Chang B; Ho J; Holt J; Cohen A; Giri D; Garg K; Bassett RL; Liang K
Arch Pathol Lab Med; 2013 Dec; 137(12):1733-9. PubMed ID: 23947655
[TBL] [Abstract][Full Text] [Related]
15. Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks.
Zeng Y; Wei Z; Yu W; Yin R; Yuan Y; Li B; Tang Z; Lu Y; Yang Y
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35849101
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome analysis of ultraviolet A-induced photoaging cells with deep sequencing.
Zheng Y; Xu Q; Chen H; Chen Q; Gong Z; Lai W
J Dermatol; 2018 Feb; 45(2):175-181. PubMed ID: 29250823
[TBL] [Abstract][Full Text] [Related]
17. Unstained Tissue Imaging and Virtual Hematoxylin and Eosin Staining of Histologic Whole Slide Images.
Koivukoski S; Khan U; Ruusuvuori P; Latonen L
Lab Invest; 2023 May; 103(5):100070. PubMed ID: 36801642
[TBL] [Abstract][Full Text] [Related]
18. Spatially aware dimension reduction for spatial transcriptomics.
Shang L; Zhou X
Nat Commun; 2022 Nov; 13(1):7203. PubMed ID: 36418351
[TBL] [Abstract][Full Text] [Related]
19. Atrophic and hypertrophic photoaging: Clinical, histologic, and molecular features of 2 distinct phenotypes of photoaged skin.
Sachs DL; Varani J; Chubb H; Fligiel SEG; Cui Y; Calderone K; Helfrich Y; Fisher GJ; Voorhees JJ
J Am Acad Dermatol; 2019 Aug; 81(2):480-488. PubMed ID: 30954583
[TBL] [Abstract][Full Text] [Related]
20. Breast cancer histopathology image-based gene expression prediction using spatial transcriptomics data and deep learning.
Rahaman MM; Millar EKA; Meijering E
Sci Rep; 2023 Aug; 13(1):13604. PubMed ID: 37604916
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
