180 related articles for article (PubMed ID: 38167104)
1. FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases.
Breeze CE; Haugen E; Gutierrez-Arcelus M; Yao X; Teschendorff A; Beck S; Dunham I; Stamatoyannopoulos J; Franceschini N; Machiela MJ; Berndt SI
Genome Biol; 2024 Jan; 25(1):3. PubMed ID: 38167104
[TBL] [Abstract][Full Text] [Related]
2. Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations.
Breeze CE; Haugen E; Reynolds A; Teschendorff A; van Dongen J; Lan Q; Rothman N; Bourque G; Dunham I; Beck S; Stamatoyannopoulos J; Franceschini N; Berndt SI
Genome Biol; 2022 Jan; 23(1):13. PubMed ID: 34996498
[TBL] [Abstract][Full Text] [Related]
3. Massively parallel reporter assays and variant scoring identified functional variants and target genes for melanoma loci and highlighted cell-type specificity.
Long E; Yin J; Funderburk KM; Xu M; Feng J; Kane A; Zhang T; Myers T; Golden A; Thakur R; Kong H; Jessop L; Kim EY; Jones K; Chari R; Machiela MJ; Yu K; ; Iles MM; Landi MT; Law MH; Chanock SJ; Brown KM; Choi J
Am J Hum Genet; 2022 Dec; 109(12):2210-2229. PubMed ID: 36423637
[TBL] [Abstract][Full Text] [Related]
4. Identification of Functional Variants in the FAM13A Chronic Obstructive Pulmonary Disease Genome-Wide Association Study Locus by Massively Parallel Reporter Assays.
Castaldi PJ; Guo F; Qiao D; Du F; Naing ZZC; Li Y; Pham B; Mikkelsen TS; Cho MH; Silverman EK; Zhou X
Am J Respir Crit Care Med; 2019 Jan; 199(1):52-61. PubMed ID: 30079747
[TBL] [Abstract][Full Text] [Related]
5. On the identification of potential regulatory variants within genome wide association candidate SNP sets.
Chen CY; Chang IS; Hsiung CA; Wasserman WW
BMC Med Genomics; 2014 Jun; 7():34. PubMed ID: 24920305
[TBL] [Abstract][Full Text] [Related]
6. Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens.
Alda-Catalinas C; Ibarra-Soria X; Flouri C; Gordillo JE; Cousminer D; Hutchinson A; Sun B; Pembroke W; Ullrich S; Krejci A; Cortes A; Acevedo A; Malla S; Fishwick C; Drewes G; Rapiteanu R
Genome Biol; 2024 Feb; 25(1):42. PubMed ID: 38308274
[TBL] [Abstract][Full Text] [Related]
7. Identification of breast cancer associated variants that modulate transcription factor binding.
Liu Y; Walavalkar NM; Dozmorov MG; Rich SS; Civelek M; Guertin MJ
PLoS Genet; 2017 Sep; 13(9):e1006761. PubMed ID: 28957321
[TBL] [Abstract][Full Text] [Related]
8. Decoding Non-coding Variants: Recent Approaches to Studying Their Role in Gene Regulation and Human Diseases.
Peña-Martínez EG; Rodríguez-Martínez JA
Front Biosci (Schol Ed); 2024 Mar; 16(1):4. PubMed ID: 38538340
[TBL] [Abstract][Full Text] [Related]
9. Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens.
Morris JA; Caragine C; Daniloski Z; Domingo J; Barry T; Lu L; Davis K; Ziosi M; Glinos DA; Hao S; Mimitou EP; Smibert P; Roeder K; Katsevich E; Lappalainen T; Sanjana NE
Science; 2023 May; 380(6646):eadh7699. PubMed ID: 37141313
[TBL] [Abstract][Full Text] [Related]
10. Integrative analysis of liver-specific non-coding regulatory SNPs associated with the risk of coronary artery disease.
Selvarajan I; Toropainen A; Garske KM; López Rodríguez M; Ko A; Miao Z; Kaminska D; Õunap K; Örd T; Ravindran A; Liu OH; Moreau PR; Jawahar Deen A; Männistö V; Pan C; Levonen AL; Lusis AJ; Heikkinen S; Romanoski CE; Pihlajamäki J; Pajukanta P; Kaikkonen MU
Am J Hum Genet; 2021 Mar; 108(3):411-430. PubMed ID: 33626337
[TBL] [Abstract][Full Text] [Related]
11. Functional genomics elucidates regulatory mechanisms of Parkinson's disease-associated variants.
Chen R; Liu J; Li S; Li X; Huo Y; Yao YG; Xiao X; Li M; Luo XJ
BMC Med; 2022 Feb; 20(1):68. PubMed ID: 35168626
[TBL] [Abstract][Full Text] [Related]
12. Functional genomic analysis delineates regulatory mechanisms of GWAS-identified bipolar disorder risk variants.
Chen R; Yang Z; Liu J; Cai X; Huo Y; Zhang Z; Li M; Chang H; Luo XJ
Genome Med; 2022 May; 14(1):53. PubMed ID: 35590387
[TBL] [Abstract][Full Text] [Related]
13. Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?
Moyerbrailean GA; Kalita CA; Harvey CT; Wen X; Luca F; Pique-Regi R
PLoS Genet; 2016 Feb; 12(2):e1005875. PubMed ID: 26901046
[TBL] [Abstract][Full Text] [Related]
14. GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding.
Zeng H; Hashimoto T; Kang DD; Gifford DK
Bioinformatics; 2016 Feb; 32(4):490-6. PubMed ID: 26476779
[TBL] [Abstract][Full Text] [Related]
15. Bioinformatics pipeline to guide late-onset Alzheimer's disease (LOAD) post-GWAS studies: Prioritizing transcription regulatory variants within LOAD-associated regions.
Lutz MW; Chiba-Falek O
Alzheimers Dement (N Y); 2022; 8(1):e12244. PubMed ID: 35229021
[TBL] [Abstract][Full Text] [Related]
16. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
Handel AE; Gallone G; Zameel Cader M; Ponting CP
Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
[TBL] [Abstract][Full Text] [Related]
17.
Cannon ME; Duan Q; Wu Y; Zeynalzadeh M; Xu Z; Kangas AJ; Soininen P; Ala-Korpela M; Civelek M; Lusis AJ; Kuusisto J; Collins FS; Boehnke M; Tang H; Laakso M; Li Y; Mohlke KL
G3 (Bethesda); 2017 Sep; 7(9):3217-3227. PubMed ID: 28754724
[TBL] [Abstract][Full Text] [Related]
18. Focus on your locus with a massively parallel reporter assay.
McAfee JC; Bell JL; Krupa O; Matoba N; Stein JL; Won H
J Neurodev Disord; 2022 Sep; 14(1):50. PubMed ID: 36085003
[TBL] [Abstract][Full Text] [Related]
19. CRISPR screens identify gene targets at breast cancer risk loci.
Tuano NK; Beesley J; Manning M; Shi W; Perlaza-Jimenez L; Malaver-Ortega LF; Paynter JM; Black D; Civitarese A; McCue K; Hatzipantelis A; Hillman K; Kaufmann S; Sivakumaran H; Polo JM; Reddel RR; Band V; French JD; Edwards SL; Powell DR; Chenevix-Trench G; Rosenbluh J
Genome Biol; 2023 Mar; 24(1):59. PubMed ID: 36991492
[TBL] [Abstract][Full Text] [Related]
20. Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants.
McAfee JC; Lee S; Lee J; Bell JL; Krupa O; Davis J; Insigne K; Bond ML; Zhao N; Boyle AP; Phanstiel DH; Love MI; Stein JL; Ruzicka WB; Davila-Velderrain J; Kosuri S; Won H
Cell Genom; 2023 Oct; 3(10):100404. PubMed ID: 37868037
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]