BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 38168317)

  • 1. Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis.
    Vannan A; Lyu R; Williams AL; Negretti NM; Mee ED; Hirsh J; Hirsh S; Nichols DS; Calvi CL; Taylor CJ; Polosukhin VV; Serezani AP; McCall AS; Gokey JJ; Shim H; Ware LB; Bacchetta MJ; Shaver CM; Blackwell TS; Walia R; Sucre JM; Kropski JA; McCarthy DJ; Banovich NE
    bioRxiv; 2023 Dec; ():. PubMed ID: 38168317
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis.
    Habermann AC; Gutierrez AJ; Bui LT; Yahn SL; Winters NI; Calvi CL; Peter L; Chung MI; Taylor CJ; Jetter C; Raju L; Roberson J; Ding G; Wood L; Sucre JMS; Richmond BW; Serezani AP; McDonnell WJ; Mallal SB; Bacchetta MJ; Loyd JE; Shaver CM; Ware LB; Bremner R; Walia R; Blackwell TS; Banovich NE; Kropski JA
    Sci Adv; 2020 Jul; 6(28):eaba1972. PubMed ID: 32832598
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular insights using spatial transcriptomics of the distal lung in congenital diaphragmatic hernia.
    Lingappan K; Olutoye OO; Cantu A; Cantu Gutierrez ME; Cortes-Santiago N; Hammond JD; Gilley J; Quintero JR; Li H; Polverino F; Gleghorn JP; Keswani SG
    Am J Physiol Lung Cell Mol Physiol; 2023 Oct; 325(4):L477-L486. PubMed ID: 37605849
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular and immune signatures, and pathological trajectories of fatal COVID-19 lungs defined by in situ spatial single-cell transcriptome analysis.
    Das A; Meng W; Liu Z; Hasib MM; Galloway H; Ramos da Silva S; Chen L; Sica GL; Paniz-Mondolfi A; Bryce C; Grimes Z; Sordillo EM; Cordon-Cardo C; Rivera KP; Flores M; Chiu YC; Huang Y; Gao SJ
    J Med Virol; 2023 Aug; 95(8):e29009. PubMed ID: 37563850
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Spatially resolved deconvolution of the fibrotic niche in lung fibrosis.
    Eyres M; Bell JA; Davies ER; Fabre A; Alzetani A; Jogai S; Marshall BG; Johnston DA; Xu Z; Fletcher SV; Wang Y; Marshall G; Davies DE; Offer E; Jones MG
    Cell Rep; 2022 Aug; 40(7):111230. PubMed ID: 35977489
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Characterization of transient and progressive pulmonary fibrosis by spatially correlated phase contrast microCT, classical histopathology and atomic force microscopy.
    D'Amico L; Svetlove A; Longo E; Meyer R; Senigagliesi B; Saccomano G; Nolte P; Wagner WL; Wielpütz MO; Leitz DHW; Duerr J; Mall MA; Casalis L; Köster S; Alves F; Tromba G; Dullin C
    Comput Biol Med; 2024 Feb; 169():107947. PubMed ID: 38211385
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.
    Delorey TM; Ziegler CGK; Heimberg G; Normand R; Yang Y; Segerstolpe A; Abbondanza D; Fleming SJ; Subramanian A; Montoro DT; Jagadeesh KA; Dey KK; Sen P; Slyper M; Pita-Juárez YH; Phillips D; Bloom-Ackerman Z; Barkas N; Ganna A; Gomez J; Normandin E; Naderi P; Popov YV; Raju SS; Niezen S; Tsai LT; Siddle KJ; Sud M; Tran VM; Vellarikkal SK; Amir-Zilberstein L; Atri DS; Beechem J; Brook OR; Chen J; Divakar P; Dorceus P; Engreitz JM; Essene A; Fitzgerald DM; Fropf R; Gazal S; Gould J; Grzyb J; Harvey T; Hecht J; Hether T; Jane-Valbuena J; Leney-Greene M; Ma H; McCabe C; McLoughlin DE; Miller EM; Muus C; Niemi M; Padera R; Pan L; Pant D; Pe'er C; Pfiffner-Borges J; Pinto CJ; Plaisted J; Reeves J; Ross M; Rudy M; Rueckert EH; Siciliano M; Sturm A; Todres E; Waghray A; Warren S; Zhang S; Zollinger DR; Cosimi L; Gupta RM; Hacohen N; Hide W; Price AL; Rajagopal J; Tata PR; Riedel S; Szabo G; Tickle TL; Hung D; Sabeti PC; Novak R; Rogers R; Ingber DE; Jiang ZG; Juric D; Babadi M; Farhi SL; Stone JR; Vlachos IS; Solomon IH; Ashenberg O; Porter CBM; Li B; Shalek AK; Villani AC; Rozenblatt-Rosen O; Regev A
    bioRxiv; 2021 Feb; ():. PubMed ID: 33655247
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Insights gained in the pathology of lung disease through single-cell transcriptomics.
    Carraro G; Stripp BR
    J Pathol; 2022 Jul; 257(4):494-500. PubMed ID: 35608561
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.
    Madissoon E; Oliver AJ; Kleshchevnikov V; Wilbrey-Clark A; Polanski K; Richoz N; Ribeiro Orsi A; Mamanova L; Bolt L; Elmentaite R; Pett JP; Huang N; Xu C; He P; Dabrowska M; Pritchard S; Tuck L; Prigmore E; Perera S; Knights A; Oszlanczi A; Hunter A; Vieira SF; Patel M; Lindeboom RGH; Campos LS; Matsuo K; Nakayama T; Yoshida M; Worlock KB; Nikolić MZ; Georgakopoulos N; Mahbubani KT; Saeb-Parsy K; Bayraktar OA; Clatworthy MR; Stegle O; Kumasaka N; Teichmann SA; Meyer KB
    Nat Genet; 2023 Jan; 55(1):66-77. PubMed ID: 36543915
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Lung tissues in patients with systemic sclerosis have gene expression patterns unique to pulmonary fibrosis and pulmonary hypertension.
    Hsu E; Shi H; Jordan RM; Lyons-Weiler J; Pilewski JM; Feghali-Bostwick CA
    Arthritis Rheum; 2011 Mar; 63(3):783-94. PubMed ID: 21360508
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Spatially distinct molecular patterns of gene expression in idiopathic pulmonary fibrosis.
    Blumhagen RZ; Kurche JS; Cool CD; Walts AD; Heinz D; Fingerlin TE; Yang IV; Schwartz DA
    Respir Res; 2023 Nov; 24(1):287. PubMed ID: 37978501
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reversal of bleomycin-induced rat pulmonary fibrosis by a xenograft of human umbilical mesenchymal stem cells from Wharton's jelly.
    Chu KA; Wang SY; Yeh CC; Fu TW; Fu YY; Ko TL; Chiu MM; Chen TH; Tsai PJ; Fu YS
    Theranostics; 2019; 9(22):6646-6664. PubMed ID: 31588241
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Reduced supply of monocyte-derived macrophages leads to a transition from nodular to diffuse lesions and tissue cell activation in silica-induced pulmonary fibrosis in mice.
    Shichino S; Abe J; Ueha S; Otsuji M; Tsukui T; Kosugi-Kanaya M; Shand FH; Hashimoto S; Suzuki HI; Morikawa T; Inagaki Y; Matsushima K
    Am J Pathol; 2015 Nov; 185(11):2923-38. PubMed ID: 26456580
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A fully automated deep learning pipeline for micro-CT-imaging-based densitometry of lung fibrosis murine models.
    Vincenzi E; Fantazzini A; Basso C; Barla A; Odone F; Leo L; Mecozzi L; Mambrini M; Ferrini E; Sverzellati N; Stellari FF
    Respir Res; 2022 Nov; 23(1):308. PubMed ID: 36369209
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NF-κB drives epithelial-mesenchymal mechanisms of lung fibrosis in a translational lung cell model.
    Sieber P; Schäfer A; Lieberherr R; Caimi SL; Lüthi U; Ryge J; Bergmann JH; Le Goff F; Stritt M; Blattmann P; Renault B; Rammelt P; Sempere B; Freti D; Studer R; White ES; Birker-Robaczewska M; Boucher M; Nayler O
    JCI Insight; 2023 Feb; 8(3):. PubMed ID: 36520540
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The endothelium in lung fibrosis: a core signaling hub in disease pathogenesis?
    Fließer E; Lins T; Berg JL; Kolb M; Kwapiszewska G
    Am J Physiol Cell Physiol; 2023 Jul; 325(1):C2-C16. PubMed ID: 37184232
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.
    Taroni JN; Greene CS; Martyanov V; Wood TA; Christmann RB; Farber HW; Lafyatis RA; Denton CP; Hinchcliff ME; Pioli PA; Mahoney JM; Whitfield ML
    Genome Med; 2017 Mar; 9(1):27. PubMed ID: 28330499
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Gene expression profiling in the lungs of patients with pulmonary hypertension associated with pulmonary fibrosis.
    Mura M; Anraku M; Yun Z; McRae K; Liu M; Waddell TK; Singer LG; Granton JT; Keshavjee S; de Perrot M
    Chest; 2012 Mar; 141(3):661-673. PubMed ID: 21835902
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational solutions for spatial transcriptomics.
    Kleino I; Frolovaitė P; Suomi T; Elo LL
    Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
    [TBL] [Abstract][Full Text] [Related]  

  • 20. COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
    Sinha S; Castillo V; Espinoza CR; Tindle C; Fonseca AG; Dan JM; Katkar GD; Das S; Sahoo D; Ghosh P
    bioRxiv; 2022 Jul; ():. PubMed ID: 34873597
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.