264 related articles for article (PubMed ID: 38176712)
1. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement.
Audano PA; Beck CR
Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712
[TBL] [Abstract][Full Text] [Related]
2. Small allelic variants are a source of ancestral bias in structural variant breakpoint placement.
Audano PA; Beck CR
bioRxiv; 2023 Jun; ():. PubMed ID: 37425850
[TBL] [Abstract][Full Text] [Related]
3. svclassify: a method to establish benchmark structural variant calls.
Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
Quinlan AR; Clark RA; Sokolova S; Leibowitz ML; Zhang Y; Hurles ME; Mell JC; Hall IM
Genome Res; 2010 May; 20(5):623-35. PubMed ID: 20308636
[TBL] [Abstract][Full Text] [Related]
5. svBreak: A New Approach for the Detection of Structural Variant Breakpoints Based on Convolutional Neural Network.
Wang S; Li J; Haque AKA; Zhao H; Yang L; Yuan X
Biomed Res Int; 2022; 2022():7196040. PubMed ID: 35345526
[TBL] [Abstract][Full Text] [Related]
6. Comparison and benchmark of structural variants detected from long read and long-read assembly.
Lin J; Jia P; Wang S; Kosters W; Ye K
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
[TBL] [Abstract][Full Text] [Related]
7. Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations.
Patel A; Schwab R; Liu YT; Bafna V
Genome Res; 2014 Feb; 24(2):318-28. PubMed ID: 24307551
[TBL] [Abstract][Full Text] [Related]
8. PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
Jiang Y; Wang Y; Brudno M
Bioinformatics; 2012 Oct; 28(20):2576-83. PubMed ID: 22851530
[TBL] [Abstract][Full Text] [Related]
9. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
Bartenhagen C; Dugas M
Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
[TBL] [Abstract][Full Text] [Related]
10. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.
Xia Y; Liu Y; Deng M; Xi R
Bioinformatics; 2017 Nov; 33(21):3348-3354. PubMed ID: 29036467
[TBL] [Abstract][Full Text] [Related]
11. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
[TBL] [Abstract][Full Text] [Related]
12. Deciphering the exact breakpoints of structural variations using long sequencing reads with DeBreak.
Chen Y; Wang AY; Barkley CA; Zhang Y; Zhao X; Gao M; Edmonds MD; Chong Z
Nat Commun; 2023 Jan; 14(1):283. PubMed ID: 36650186
[TBL] [Abstract][Full Text] [Related]
13. Towards a better understanding of the low recall of insertion variants with short-read based variant callers.
Delage WJ; Thevenon J; Lemaitre C
BMC Genomics; 2020 Nov; 21(1):762. PubMed ID: 33148192
[TBL] [Abstract][Full Text] [Related]
14. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
15. A survey of algorithms for the detection of genomic structural variants from long-read sequencing data.
Ahsan MU; Liu Q; Perdomo JE; Fang L; Wang K
Nat Methods; 2023 Aug; 20(8):1143-1158. PubMed ID: 37386186
[TBL] [Abstract][Full Text] [Related]
16. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
Zhang Y; Chen F; Creighton CJ
BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
[TBL] [Abstract][Full Text] [Related]
17. Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
Lam HY; Mu XJ; Stütz AM; Tanzer A; Cayting PD; Snyder M; Kim PM; Korbel JO; Gerstein MB
Nat Biotechnol; 2010 Jan; 28(1):47-55. PubMed ID: 20037582
[TBL] [Abstract][Full Text] [Related]
18. Identification of genomic indels and structural variations using split reads.
Zhang ZD; Du J; Lam H; Abyzov A; Urban AE; Snyder M; Gerstein M
BMC Genomics; 2011 Jul; 12():375. PubMed ID: 21787423
[TBL] [Abstract][Full Text] [Related]
19. Improving structural variant clustering to reduce the negative effect of the breakpoint uncertainty problem.
Geryk J; Zinkova A; Zedníková I; Simková H; Stenzl V; Korabecna M
BMC Bioinformatics; 2021 Sep; 22(1):464. PubMed ID: 34579642
[TBL] [Abstract][Full Text] [Related]
20. Truvari: refined structural variant comparison preserves allelic diversity.
English AC; Menon VK; Gibbs RA; Metcalf GA; Sedlazeck FJ
Genome Biol; 2022 Dec; 23(1):271. PubMed ID: 36575487
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]