141 related articles for article (PubMed ID: 38177576)
1. Generative aptamer discovery using RaptGen.
Iwano N; Adachi T; Aoki K; Nakamura Y; Hamada M
Nat Comput Sci; 2022 Jun; 2(6):378-386. PubMed ID: 38177576
[TBL] [Abstract][Full Text] [Related]
2. RaptGen-Assisted Generation of an RNA/DNA Hybrid Aptamer against SARS-CoV-2 Spike Protein.
Adachi T; Nakamura S; Michishita A; Kawahara D; Yamamoto M; Hamada M; Nakamura Y
Biochemistry; 2024 Apr; 63(7):906-912. PubMed ID: 38457656
[TBL] [Abstract][Full Text] [Related]
3. Searching the Sequence Space for Potent Aptamers Using SELEX in Silico.
Zhou Q; Xia X; Luo Z; Liang H; Shakhnovich E
J Chem Theory Comput; 2015 Dec; 11(12):5939-46. PubMed ID: 26642994
[TBL] [Abstract][Full Text] [Related]
4. RaptRanker: in silico RNA aptamer selection from HT-SELEX experiment based on local sequence and structure information.
Ishida R; Adachi T; Yokota A; Yoshihara H; Aoki K; Nakamura Y; Hamada M
Nucleic Acids Res; 2020 Aug; 48(14):e82. PubMed ID: 32537639
[TBL] [Abstract][Full Text] [Related]
5. AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders.
Shin I; Kang K; Kim J; Sel S; Choi J; Lee JW; Kang HY; Song G
BMC Bioinformatics; 2023 Nov; 24(1):447. PubMed ID: 38012571
[TBL] [Abstract][Full Text] [Related]
6. Improving aptamer performance with nucleic acid mimics: de novo and post-SELEX approaches.
Oliveira R; Pinho E; Sousa AL; DeStefano JJ; Azevedo NF; Almeida C
Trends Biotechnol; 2022 May; 40(5):549-563. PubMed ID: 34756455
[TBL] [Abstract][Full Text] [Related]
7. Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery.
Hoinka J; Berezhnoy A; Dao P; Sauna ZE; Gilboa E; Przytycka TM
Nucleic Acids Res; 2015 Jul; 43(12):5699-707. PubMed ID: 25870409
[TBL] [Abstract][Full Text] [Related]
8. Efficient Screening of Pesticide Diazinon-Binding Aptamers Using the Sol-Gel-Coated Nanoporous Membrane-Assisted SELEX Process and Next-Generation Sequencing.
Lim MC; Lim ES; Lim JA; Choi SW; Chang HJ
Appl Biochem Biotechnol; 2022 Sep; 194(9):3901-3913. PubMed ID: 35556210
[TBL] [Abstract][Full Text] [Related]
9. Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach.
Lee G; Jang GH; Kang HY; Song G
PLoS One; 2021; 16(6):e0253760. PubMed ID: 34170922
[TBL] [Abstract][Full Text] [Related]
10. Refining the Results of a Classical SELEX Experiment by Expanding the Sequence Data Set of an Aptamer Pool Selected for Protein A.
Stoltenburg R; Strehlitz B
Int J Mol Sci; 2018 Feb; 19(2):. PubMed ID: 29495282
[TBL] [Abstract][Full Text] [Related]
11. Characterisation of aptamer-target interactions by branched selection and high-throughput sequencing of SELEX pools.
Dupont DM; Larsen N; Jensen JK; Andreasen PA; Kjems J
Nucleic Acids Res; 2015 Dec; 43(21):e139. PubMed ID: 26163061
[TBL] [Abstract][Full Text] [Related]
12. Structural optimization of an aptamer generated from Ligand-Guided Selection (LIGS) resulted in high affinity variant toward mIgM expressed on Burkitt's lymphoma cell lines.
Zümrüt HE; Batool S; Van N; George S; Bhandari S; Mallikaratchy P
Biochim Biophys Acta Gen Subj; 2017 Jul; 1861(7):1825-1832. PubMed ID: 28363693
[TBL] [Abstract][Full Text] [Related]
13. APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data.
Caroli J; Taccioli C; De La Fuente A; Serafini P; Bicciato S
Bioinformatics; 2016 Jan; 32(2):161-4. PubMed ID: 26395772
[TBL] [Abstract][Full Text] [Related]
14. In silico design of novel aptamers utilizing a hybrid method of machine learning and genetic algorithm.
Torkamanian-Afshar M; Nematzadeh S; Tabarzad M; Najafi A; Lanjanian H; Masoudi-Nejad A
Mol Divers; 2021 Aug; 25(3):1395-1407. PubMed ID: 33554306
[TBL] [Abstract][Full Text] [Related]
15. FSBC: fast string-based clustering for HT-SELEX data.
Kato S; Ono T; Minagawa H; Horii K; Shiratori I; Waga I; Ito K; Aoki T
BMC Bioinformatics; 2020 Jun; 21(1):263. PubMed ID: 32580745
[TBL] [Abstract][Full Text] [Related]
16. Selection of DNA aptamer against prostate specific antigen using a genetic algorithm and application to sensing.
Savory N; Abe K; Sode K; Ikebukuro K
Biosens Bioelectron; 2010 Dec; 26(4):1386-91. PubMed ID: 20692149
[TBL] [Abstract][Full Text] [Related]
17. Recent progress of SELEX methods for screening nucleic acid aptamers.
Zhu C; Feng Z; Qin H; Chen L; Yan M; Li L; Qu F
Talanta; 2024 Jan; 266(Pt 1):124998. PubMed ID: 37527564
[TBL] [Abstract][Full Text] [Related]
18. Non-SELEX method for aptamer selection against β-casomorphin-7 peptide.
Parashar A; Bhushan V; Mahanandia NC; Kumar S; Mohanty AK
J Dairy Sci; 2022 Jul; 105(7):5545-5560. PubMed ID: 35534270
[TBL] [Abstract][Full Text] [Related]
19. Nucleic acid aptamer application in diagnosis and therapy of colorectal cancer based on cell-SELEX technology.
Chen C; Zhou S; Cai Y; Tang F
NPJ Precis Oncol; 2017; 1(1):37. PubMed ID: 29872716
[TBL] [Abstract][Full Text] [Related]
20. An improved SELEX technique for selection of DNA aptamers binding to M-type 11 of Streptococcus pyogenes.
Hamula CL; Peng H; Wang Z; Tyrrell GJ; Li XF; Le XC
Methods; 2016 Mar; 97():51-7. PubMed ID: 26678795
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]