BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 38200043)

  • 41. A blind deconvolution approach for improving the resolution of cryo-EM density maps.
    Hirsch M; Schölkopf B; Habeck M
    J Comput Biol; 2011 Mar; 18(3):335-46. PubMed ID: 21385038
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Real-space refinement with DireX: from global fitting to side-chain improvements.
    Wang Z; Schröder GF
    Biopolymers; 2012 Sep; 97(9):687-97. PubMed ID: 22696405
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions.
    Brown A; Long F; Nicholls RA; Toots J; Emsley P; Murshudov G
    Acta Crystallogr D Biol Crystallogr; 2015 Jan; 71(Pt 1):136-53. PubMed ID: 25615868
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps
    Avramov TK; Vyenielo D; Gomez-Blanco J; Adinarayanan S; Vargas J; Si D
    Molecules; 2019 Mar; 24(6):. PubMed ID: 30917528
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Cryo-EM of macromolecular assemblies at near-atomic resolution.
    Baker ML; Zhang J; Ludtke SJ; Chiu W
    Nat Protoc; 2010 Sep; 5(10):1697-708. PubMed ID: 20885381
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.
    Nakamura A; Meng H; Zhao M; Wang F; Hou J; Cao R; Si D
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36682003
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Finding the right fit: chiseling structures out of cryo-electron microscopy maps.
    Villa E; Lasker K
    Curr Opin Struct Biol; 2014 Apr; 25():118-25. PubMed ID: 24814094
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.
    Dou H; Burrows DW; Baker ML; Ju T
    Biophys J; 2017 Jun; 112(12):2479-2493. PubMed ID: 28636906
    [TBL] [Abstract][Full Text] [Related]  

  • 49. CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps.
    Mulvaney T; Kretsch RC; Elliott L; Beton JG; Kryshtafovych A; Rigden DJ; Das R; Topf M
    Proteins; 2023 Dec; 91(12):1935-1951. PubMed ID: 37994556
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Using Combined Features to Analyze Atomic Structures Derived from Cryo-EM Density Maps.
    Chen L; He J
    ACM BCB; 2018 Aug; 2018():651-655. PubMed ID: 37434945
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Protein Structural Modeling for Electron Microscopy Maps Using VESPER and MAINMAST.
    Alnabati E; Terashi G; Kihara D
    Curr Protoc; 2022 Jul; 2(7):e494. PubMed ID: 35849043
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Automated cryo-EM structure refinement using correlation-driven molecular dynamics.
    Igaev M; Kutzner C; Bock LV; Vaiana AC; Grubmüller H
    Elife; 2019 Mar; 8():. PubMed ID: 30829573
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.
    Ahmed A; Whitford PC; Sanbonmatsu KY; Tama F
    J Struct Biol; 2012 Feb; 177(2):561-70. PubMed ID: 22019767
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Effects of cryo-EM cooling on structural ensembles.
    Bock LV; Grubmüller H
    Nat Commun; 2022 Mar; 13(1):1709. PubMed ID: 35361752
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking.
    Baker MR; Rees I; Ludtke SJ; Chiu W; Baker ML
    Structure; 2012 Mar; 20(3):450-63. PubMed ID: 22405004
    [TBL] [Abstract][Full Text] [Related]  

  • 56. CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learning.
    Wang X; Terashi G; Kihara D
    Nat Methods; 2023 Nov; 20(11):1739-1747. PubMed ID: 37783885
    [TBL] [Abstract][Full Text] [Related]  

  • 57. EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies.
    Dror O; Lasker K; Nussinov R; Wolfson H
    Acta Crystallogr D Biol Crystallogr; 2007 Jan; 63(Pt 1):42-9. PubMed ID: 17164525
    [TBL] [Abstract][Full Text] [Related]  

  • 58. ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps.
    de Vries SJ; Zacharias M
    PLoS One; 2012; 7(12):e49733. PubMed ID: 23251350
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures.
    Giri N; Wang L; Cheng J
    bioRxiv; 2024 Jan; ():. PubMed ID: 37398020
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Cryo-EM model validation using independent map reconstructions.
    DiMaio F; Zhang J; Chiu W; Baker D
    Protein Sci; 2013 Jun; 22(6):865-8. PubMed ID: 23592445
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.