These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

122 related articles for article (PubMed ID: 38200554)

  • 1. FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets.
    Zhang P; Liu H; Wei Y; Zhai Y; Tian Q; Zou Q
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38200554
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A novel fast multiple nucleotide sequence alignment method based on FM-index.
    Liu H; Zou Q; Xu Y
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34893794
    [TBL] [Abstract][Full Text] [Related]  

  • 3. WMSA: a novel method for multiple sequence alignment of DNA sequences.
    Wei Y; Zou Q; Tang F; Yu L
    Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FAME: fast and memory efficient multiple sequences alignment tool through compatible chain of roots.
    Naznooshsadat E; Elham P; Ali SZ
    Bioinformatics; 2020 Jun; 36(12):3662-3668. PubMed ID: 32170927
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Suffix tree searcher: exploration of common substrings in large DNA sequence sets.
    Minkley D; Whitney MJ; Lin SH; Barsky MG; Kelly C; Upton C
    BMC Res Notes; 2014 Jul; 7():466. PubMed ID: 25053142
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments.
    Zhai Y; Chao J; Wang Y; Zhang P; Tang F; Zou Q
    PLoS Comput Biol; 2024 Apr; 20(4):e1011988. PubMed ID: 38557416
    [TBL] [Abstract][Full Text] [Related]  

  • 7. UPP2: fast and accurate alignment of datasets with fragmentary sequences.
    Park M; Ivanovic S; Chu G; Shen C; Warnow T
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36625535
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
    Chen X; Wang C; Tang S; Yu C; Zou Q
    BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Recursive MAGUS: Scalable and accurate multiple sequence alignment.
    Smirnov V
    PLoS Comput Biol; 2021 Oct; 17(10):e1008950. PubMed ID: 34613974
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes.
    Moshiri N
    Bioinformatics; 2021 May; 37(5):714-716. PubMed ID: 32814953
    [TBL] [Abstract][Full Text] [Related]  

  • 11. M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic.
    Zambrano-Vega C; Nebro AJ; García-Nieto J; Aldana-Montes JF
    Bioinformatics; 2017 Oct; 33(19):3011-3017. PubMed ID: 28541404
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.
    Su W; Liao X; Lu Y; Zou Q; Peng S
    J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MAGUS: Multiple sequence Alignment using Graph clUStering.
    Smirnov V; Warnow T
    Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences.
    Tang F; Chao J; Wei Y; Yang F; Zhai Y; Xu L; Zou Q
    Mol Biol Evol; 2022 Aug; 39(8):. PubMed ID: 35915051
    [TBL] [Abstract][Full Text] [Related]  

  • 15. WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.
    Chen J; Chao J; Liu H; Yang F; Zou Q; Tang F
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200156
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accelerating spliced alignment of long RNA sequencing reads using parallel maximal exact match retrieval.
    Wang R; Zhang Y
    Comput Biol Med; 2024 Jun; 175():108542. PubMed ID: 38714048
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PASTA for proteins.
    Collins K; Warnow T
    Bioinformatics; 2018 Nov; 34(22):3939-3941. PubMed ID: 29931282
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.
    Shen C; Zaharias P; Warnow T
    Bioinformatics; 2022 Jan; 38(4):918-924. PubMed ID: 34791036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding.
    Liu Y; Yuan H; Zhang Q; Wang Z; Xiong S; Wen N; Zhang Y
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37856335
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.