215 related articles for article (PubMed ID: 38206813)
1. ZNF143 deletion alters enhancer/promoter looping and CTCF/cohesin geometry.
Zhang M; Huang H; Li J; Wu Q
Cell Rep; 2024 Jan; 43(1):113663. PubMed ID: 38206813
[TBL] [Abstract][Full Text] [Related]
2. Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Epigenetics Chromatin; 2020 Jul; 13(1):30. PubMed ID: 32680543
[TBL] [Abstract][Full Text] [Related]
3. [ZNF143 is involved in CTCF-mediated chromatin interactions by cooperation with cohesin and other partners].
Ye BY; Shen WL; Wang D; Li P; Zhang Z; Shi ML; Zhang Y; Zhang FX; Zhao ZH
Mol Biol (Mosk); 2016; 50(3):496-503. PubMed ID: 27414788
[TBL] [Abstract][Full Text] [Related]
4. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Elife; 2018 May; 7():. PubMed ID: 29757144
[TBL] [Abstract][Full Text] [Related]
5. CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention.
Pugacheva EM; Kubo N; Loukinov D; Tajmul M; Kang S; Kovalchuk AL; Strunnikov AV; Zentner GE; Ren B; Lobanenkov VV
Proc Natl Acad Sci U S A; 2020 Jan; 117(4):2020-2031. PubMed ID: 31937660
[TBL] [Abstract][Full Text] [Related]
6. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
[TBL] [Abstract][Full Text] [Related]
7. CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Hansen AS; Pustova I; Cattoglio C; Tjian R; Darzacq X
Elife; 2017 May; 6():. PubMed ID: 28467304
[TBL] [Abstract][Full Text] [Related]
8. Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging.
Gabriele M; Brandão HB; Grosse-Holz S; Jha A; Dailey GM; Cattoglio C; Hsieh TS; Mirny L; Zechner C; Hansen AS
Science; 2022 Apr; 376(6592):496-501. PubMed ID: 35420890
[TBL] [Abstract][Full Text] [Related]
9. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
10. Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes.
Rinzema NJ; Sofiadis K; Tjalsma SJD; Verstegen MJAM; Oz Y; Valdes-Quezada C; Felder AK; Filipovska T; van der Elst S; de Andrade Dos Ramos Z; Han R; Krijger PHL; de Laat W
Nat Struct Mol Biol; 2022 Jun; 29(6):563-574. PubMed ID: 35710842
[TBL] [Abstract][Full Text] [Related]
11. Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.
Hanssen LLP; Kassouf MT; Oudelaar AM; Biggs D; Preece C; Downes DJ; Gosden M; Sharpe JA; Sloane-Stanley JA; Hughes JR; Davies B; Higgs DR
Nat Cell Biol; 2017 Aug; 19(8):952-961. PubMed ID: 28737770
[TBL] [Abstract][Full Text] [Related]
12. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Uusküla-Reimand L; Hou H; Samavarchi-Tehrani P; Rudan MV; Liang M; Medina-Rivera A; Mohammed H; Schmidt D; Schwalie P; Young EJ; Reimand J; Hadjur S; Gingras AC; Wilson MD
Genome Biol; 2016 Aug; 17(1):182. PubMed ID: 27582050
[TBL] [Abstract][Full Text] [Related]
13. Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection.
Jia Z; Li J; Ge X; Wu Y; Guo Y; Wu Q
Genome Biol; 2020 Mar; 21(1):75. PubMed ID: 32293525
[TBL] [Abstract][Full Text] [Related]
14. Formation of Chromosomal Domains by Loop Extrusion.
Fudenberg G; Imakaev M; Lu C; Goloborodko A; Abdennur N; Mirny LA
Cell Rep; 2016 May; 15(9):2038-49. PubMed ID: 27210764
[TBL] [Abstract][Full Text] [Related]
15. CTCF and R-loops are boundaries of cohesin-mediated DNA looping.
Zhang H; Shi Z; Banigan EJ; Kim Y; Yu H; Bai XC; Finkelstein IJ
Mol Cell; 2023 Aug; 83(16):2856-2871.e8. PubMed ID: 37536339
[TBL] [Abstract][Full Text] [Related]
16. On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.
van Ruiten MS; Rowland BD
Curr Opin Cell Biol; 2021 Jun; 70():84-90. PubMed ID: 33545664
[TBL] [Abstract][Full Text] [Related]
17. ZNF143 mediates CTCF-bound promoter-enhancer loops required for murine hematopoietic stem and progenitor cell function.
Zhou Q; Yu M; Tirado-Magallanes R; Li B; Kong L; Guo M; Tan ZH; Lee S; Chai L; Numata A; Benoukraf T; Fullwood MJ; Osato M; Ren B; Tenen DG
Nat Commun; 2021 Jan; 12(1):43. PubMed ID: 33397967
[TBL] [Abstract][Full Text] [Related]
18. CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.
Davidson IF; Barth R; Zaczek M; van der Torre J; Tang W; Nagasaka K; Janissen R; Kerssemakers J; Wutz G; Dekker C; Peters JM
Nature; 2023 Apr; 616(7958):822-827. PubMed ID: 37076620
[TBL] [Abstract][Full Text] [Related]
19. ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin
Wutz G; Ladurner R; St Hilaire BG; Stocsits RR; Nagasaka K; Pignard B; Sanborn A; Tang W; Várnai C; Ivanov MP; Schoenfelder S; van der Lelij P; Huang X; Dürnberger G; Roitinger E; Mechtler K; Davidson IF; Fraser P; Lieberman-Aiden E; Peters JM
Elife; 2020 Feb; 9():. PubMed ID: 32065581
[TBL] [Abstract][Full Text] [Related]
20. Opposing Effects of Cohesin and Transcription on CTCF Organization Revealed by Super-resolution Imaging.
Gu B; Comerci CJ; McCarthy DG; Saurabh S; Moerner WE; Wysocka J
Mol Cell; 2020 Nov; 80(4):699-711.e7. PubMed ID: 33091336
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]