124 related articles for article (PubMed ID: 38212571)
1. RFGR: Repeat Finder for Complete and Assembled Whole Genomes and NGS Reads.
Sukumaran R; Shahina K; Nair AS
Biochem Genet; 2024 Jan; ():. PubMed ID: 38212571
[TBL] [Abstract][Full Text] [Related]
2. RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads.
Liao X; Gao X; Zhang X; Wu FX; Wang J
BMC Bioinformatics; 2020 Oct; 21(1):463. PubMed ID: 33076827
[TBL] [Abstract][Full Text] [Related]
3. Genome assembly composition of the String "ACGT" array: a review of data structure accuracy and performance challenges.
Magdy Mohamed Abdelaziz Barakat S; Sallehuddin R; Yuhaniz SS; R Khairuddin RF; Mahmood Y
PeerJ Comput Sci; 2023; 9():e1180. PubMed ID: 37547391
[TBL] [Abstract][Full Text] [Related]
4. RepARK--de novo creation of repeat libraries from whole-genome NGS reads.
Koch P; Platzer M; Downie BR
Nucleic Acids Res; 2014 May; 42(9):e80. PubMed ID: 24634442
[TBL] [Abstract][Full Text] [Related]
5. An improved approach for reconstructing consensus repeats from short sequence reads.
Chu C; Pei J; Wu Y
BMC Genomics; 2018 Aug; 19(Suppl 6):566. PubMed ID: 30367582
[TBL] [Abstract][Full Text] [Related]
6. Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231.
Baptista RP; Reis-Cunha JL; DeBarry JD; Chiari E; Kissinger JC; Bartholomeu DC; Macedo AM
Microb Genom; 2018 Apr; 4(4):. PubMed ID: 29442617
[TBL] [Abstract][Full Text] [Related]
7. The nature and genomic landscape of repetitive DNA classes in Chrysanthemum nankingense shows recent genomic changes.
Zhang F; Chen F; Schwarzacher T; Heslop-Harrison JS; Teng N
Ann Bot; 2023 Feb; 131(1):215-228. PubMed ID: 35639931
[TBL] [Abstract][Full Text] [Related]
8. From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity.
Misas E; Muñoz JF; Gallo JE; McEwen JG; Clay OK
Comput Biol Chem; 2016 Apr; 61():258-69. PubMed ID: 26970210
[TBL] [Abstract][Full Text] [Related]
9. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
10. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
[TBL] [Abstract][Full Text] [Related]
11. Statistical Mitogenome Assembly with RepeaTs.
Alqahtani F; Măndoiu II
J Comput Biol; 2020 Sep; 27(9):1407-1421. PubMed ID: 32048871
[TBL] [Abstract][Full Text] [Related]
12. Combination of de novo assembly of massive sequencing reads with classical repeat prediction improves identification of repetitive sequences in Schistosoma mansoni.
Lepesant JM; Roquis D; Emans R; Cosseau C; Arancibia N; Mitta G; Grunau C
Exp Parasitol; 2012 Apr; 130(4):470-4. PubMed ID: 22381218
[TBL] [Abstract][Full Text] [Related]
13. BASE: a practical de novo assembler for large genomes using long NGS reads.
Liu B; Liu CM; Li D; Li Y; Ting HF; Yiu SM; Luo R; Lam TW
BMC Genomics; 2016 Aug; 17 Suppl 5(Suppl 5):499. PubMed ID: 27586129
[TBL] [Abstract][Full Text] [Related]
14. Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.
You FM; Huo N; Deal KR; Gu YQ; Luo MC; McGuire PE; Dvorak J; Anderson OD
BMC Genomics; 2011 Jan; 12():59. PubMed ID: 21266061
[TBL] [Abstract][Full Text] [Related]
15. Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.
Cahill MJ; Köser CU; Ross NE; Archer JA
PLoS One; 2010 Jul; 5(7):e11518. PubMed ID: 20634954
[TBL] [Abstract][Full Text] [Related]
16. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
17. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads.
Du H; Liang C
Nat Commun; 2019 Nov; 10(1):5360. PubMed ID: 31767853
[TBL] [Abstract][Full Text] [Related]
18. A combined de novo assembly approach increases the quality of prokaryotic draft genomes.
Çabuk U; Ünlü ES
Folia Microbiol (Praha); 2022 Oct; 67(5):801-810. PubMed ID: 35668290
[TBL] [Abstract][Full Text] [Related]
19. Finding long tandem repeats in long noisy reads.
Morishita S; Ichikawa K; Myers EW
Bioinformatics; 2021 May; 37(5):612-621. PubMed ID: 33031558
[TBL] [Abstract][Full Text] [Related]
20. Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats.
Wicker T; Narechania A; Sabot F; Stein J; Vu GT; Graner A; Ware D; Stein N
BMC Genomics; 2008 Oct; 9():518. PubMed ID: 18976483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
