BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 38234848)

  • 21. smORFunction: a tool for predicting functions of small open reading frames and microproteins.
    Ji X; Cui C; Cui Q
    BMC Bioinformatics; 2020 Oct; 21(1):455. PubMed ID: 33054771
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Recommendations for bacterial ribosome profiling experiments based on bioinformatic evaluation of published data.
    Glaub A; Huptas C; Neuhaus K; Ardern Z
    J Biol Chem; 2020 Jul; 295(27):8999-9011. PubMed ID: 32385111
    [TBL] [Abstract][Full Text] [Related]  

  • 23. What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
    Prensner JR; Abelin JG; Kok LW; Clauser KR; Mudge JM; Ruiz-Orera J; Bassani-Sternberg M; Moritz RL; Deutsch EW; van Heesch S
    Mol Cell Proteomics; 2023 Sep; 22(9):100631. PubMed ID: 37572790
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers.
    Zaheed O; Kiniry SJ; Baranov PV; Dean K
    Front Cell Dev Biol; 2021; 9():703374. PubMed ID: 34490252
    [TBL] [Abstract][Full Text] [Related]  

  • 25. RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing.
    Popa A; Lebrigand K; Paquet A; Nottet N; Robbe-Sermesant K; Waldmann R; Barbry P
    F1000Res; 2016; 5():1309. PubMed ID: 27347386
    [TBL] [Abstract][Full Text] [Related]  

  • 26. HRPDviewer: human ribosome profiling data viewer.
    Wu WS; Jiang YX; Chang JW; Chu YH; Chiu YH; Tsao YH; Nordling TEM; Tseng YY; Tseng JT
    Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30010738
    [TBL] [Abstract][Full Text] [Related]  

  • 27. BONCAT-based Profiling of Nascent Small and Alternative Open Reading Frame-encoded Proteins.
    Cao X; Chen Y; Khitun A; Slavoff SA
    Bio Protoc; 2023 Jan; 13(1):e4585. PubMed ID: 36789088
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Developmental regulation of canonical and small ORF translation from mRNAs.
    Patraquim P; Mumtaz MAS; Pueyo JI; Aspden JL; Couso JP
    Genome Biol; 2020 May; 21(1):128. PubMed ID: 32471506
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Revealing the small proteome of
    Hadjeras L; Bartel J; Maier LK; Maaß S; Vogel V; Svensson SL; Eggenhofer F; Gelhausen R; Müller T; Alkhnbashi OS; Backofen R; Becher D; Sharma CM; Marchfelder A
    Microlife; 2023; 4():uqad001. PubMed ID: 37223747
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Genome-wide identification and differential analysis of translational initiation.
    Zhang P; He D; Xu Y; Hou J; Pan BF; Wang Y; Liu T; Davis CM; Ehli EA; Tan L; Zhou F; Hu J; Yu Y; Chen X; Nguyen TM; Rosen JM; Hawke DH; Ji Z; Chen Y
    Nat Commun; 2017 Nov; 8(1):1749. PubMed ID: 29170441
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Mining for Small Translated ORFs.
    Chugunova A; Navalayeu T; Dontsova O; Sergiev P
    J Proteome Res; 2018 Jan; 17(1):1-11. PubMed ID: 29188713
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A review of Ribosome profiling and tools used in Ribo-seq data analysis.
    Limbu MS; Xiong T; Wang S
    Comput Struct Biotechnol J; 2024 Dec; 23():1912-1918. PubMed ID: 38721586
    [TBL] [Abstract][Full Text] [Related]  

  • 33. RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling.
    Wang H; Yang L; Wang Y; Chen L; Li H; Xie Z
    Nucleic Acids Res; 2019 Jan; 47(D1):D230-D234. PubMed ID: 30335166
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture.
    Mahboubi A; Delhomme N; Häggström S; Hanson J
    Plant Methods; 2021 Aug; 17(1):92. PubMed ID: 34429136
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data.
    Perkins P; Mazzoni-Putman S; Stepanova A; Alonso J; Heber S
    BMC Genomics; 2019 Jun; 20(Suppl 5):422. PubMed ID: 31167636
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae.
    He C; Jia C; Zhang Y; Xu P
    J Proteome Res; 2018 Jul; 17(7):2335-2344. PubMed ID: 29897761
    [TBL] [Abstract][Full Text] [Related]  

  • 37. ProsmORF-pred: a machine learning-based method for the identification of small ORFs in prokaryotic genomes.
    Khanduja A; Kumar M; Mohanty D
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 36988160
    [TBL] [Abstract][Full Text] [Related]  

  • 38. HRIBO: high-throughput analysis of bacterial ribosome profiling data.
    Gelhausen R; Svensson SL; Froschauer K; Heyl F; Hadjeras L; Sharma CM; Eggenhofer F; Backofen R
    Bioinformatics; 2021 Aug; 37(14):2061-2063. PubMed ID: 33175953
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Identification and analysis of smORFs in Chlamydomonas reinhardtii.
    Peng Z; Yao S; Zhang B; Huang K; Wan C
    Genomics; 2022 Sep; 114(5):110444. PubMed ID: 35933072
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes.
    Weaver J; Mohammad F; Buskirk AR; Storz G
    mBio; 2019 Mar; 10(2):. PubMed ID: 30837344
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.