These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 38237200)

  • 1. Structure of the space of folding protein sequences defined by large language models.
    Zambon A; Zecchina R; Tiana G
    Phys Biol; 2024 Jan; 21(2):. PubMed ID: 38237200
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Size and structure of the sequence space of repeat proteins.
    Marchi J; Galpern EA; Espada R; Ferreiro DU; Walczak AM; Mora T
    PLoS Comput Biol; 2019 Aug; 15(8):e1007282. PubMed ID: 31415557
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristics.
    Keasar C; Levitt M
    J Mol Biol; 2003 May; 329(1):159-74. PubMed ID: 12742025
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein sequence design by conformational landscape optimization.
    Norn C; Wicky BIM; Juergens D; Liu S; Kim D; Tischer D; Koepnick B; Anishchenko I; ; Baker D; Ovchinnikov S
    Proc Natl Acad Sci U S A; 2021 Mar; 118(11):. PubMed ID: 33712545
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences.
    Ma B; Nussinov R
    Protein Sci; 2003 Sep; 12(9):1882-93. PubMed ID: 12930988
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Multisequence algorithm for coarse-grained biomolecular simulations: Exploring the sequence-structure relationship of proteins.
    Aina A; Wallin S
    J Chem Phys; 2017 Sep; 147(9):095102. PubMed ID: 28886656
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evolution, energy landscapes and the paradoxes of protein folding.
    Wolynes PG
    Biochimie; 2015 Dec; 119():218-30. PubMed ID: 25530262
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Physics-Based Computational Protein Design: An Update.
    Mignon D; Druart K; Michael E; Opuu V; Polydorides S; Villa F; Gaillard T; Panel N; Archontis G; Simonson T
    J Phys Chem A; 2020 Dec; 124(51):10637-10648. PubMed ID: 33170681
    [TBL] [Abstract][Full Text] [Related]  

  • 9. New Monte Carlo algorithms for protein folding.
    Hansmann UH; Okamoto Y
    Curr Opin Struct Biol; 1999 Apr; 9(2):177-83. PubMed ID: 10322208
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.
    Liwo A; Khalili M; Czaplewski C; Kalinowski S; Ołdziej S; Wachucik K; Scheraga HA
    J Phys Chem B; 2007 Jan; 111(1):260-85. PubMed ID: 17201450
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Enhanced conformational sampling in Monte Carlo simulations of proteins: application to a constrained peptide.
    Kidera A
    Proc Natl Acad Sci U S A; 1995 Oct; 92(21):9886-9. PubMed ID: 7568238
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Atlasing of Assembly Landscapes using Distance Geometry and Graph Rigidity.
    Prabhu R; Sitharam M; Ozkan A; Wu R
    J Chem Inf Model; 2020 Oct; 60(10):4924-4957. PubMed ID: 32786706
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Overcoming entropic barrier with coupled sampling at dual resolutions.
    Lwin TZ; Luo R
    J Chem Phys; 2005 Nov; 123(19):194904. PubMed ID: 16321110
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction.
    Saleh S; Olson B; Shehu A
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S4. PubMed ID: 24565020
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Selection originating from protein stability/foldability: Relationships between protein folding free energy, sequence ensemble, and fitness.
    Miyazawa S
    J Theor Biol; 2017 Nov; 433():21-38. PubMed ID: 28844906
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformation spaces of proteins.
    Sullivan DC; Kuntz ID
    Proteins; 2001 Mar; 42(4):495-511. PubMed ID: 11170204
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction.
    Zaman AB; Shehu A
    BMC Bioinformatics; 2019 Apr; 20(1):211. PubMed ID: 31023237
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Free energy landscape of protein-like chains with discontinuous potentials.
    Movahed HB; van Zon R; Schofield J
    J Chem Phys; 2012 Jun; 136(24):245103. PubMed ID: 22755604
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins.
    Liu J; Sun Y; Li G; Song B; Huang W
    Comput Biol Chem; 2013 Dec; 47():142-8. PubMed ID: 24077543
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.