BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 38238628)

  • 1. Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development.
    Hung TC; Kingsley DM; Boettiger AN
    Nat Genet; 2024 Feb; 56(2):306-314. PubMed ID: 38238628
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.
    Islam Z; Saravanan B; Walavalkar K; Farooq U; Singh AK; Radhakrishnan S; Thakur J; Pandit A; Henikoff S; Notani D
    Genome Res; 2023 Jan; 33(1):1-17. PubMed ID: 36650052
    [TBL] [Abstract][Full Text] [Related]  

  • 3. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
    Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
    PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene.
    Kabirova E; Ryzhkova A; Lukyanchikova V; Khabarova A; Korablev A; Shnaider T; Nuriddinov M; Belokopytova P; Smirnov A; Khotskin NV; Kontsevaya G; Serova I; Battulin N
    Nat Commun; 2024 May; 15(1):4521. PubMed ID: 38806452
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Formation of Chromosomal Domains by Loop Extrusion.
    Fudenberg G; Imakaev M; Lu C; Goloborodko A; Abdennur N; Mirny LA
    Cell Rep; 2016 May; 15(9):2038-49. PubMed ID: 27210764
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Context-dependent enhancer function revealed by targeted inter-TAD relocation.
    Bolt CC; Lopez-Delisle L; Hintermann A; Mascrez B; Rauseo A; Andrey G; Duboule D
    Nat Commun; 2022 Jun; 13(1):3488. PubMed ID: 35715427
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TAD boundary and strength prediction by integrating sequence and epigenetic profile information.
    Wang Y; Liu Y; Xu Q; Xu Y; Cao K; Deng N; Wang R; Zhang X; Zheng R; Li G; Fang Y
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33866359
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.
    Smith EM; Lajoie BR; Jain G; Dekker J
    Am J Hum Genet; 2016 Jan; 98(1):185-201. PubMed ID: 26748519
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Enhancer-promoter interactions can form independently of genomic distance and be functional across TAD boundaries.
    Balasubramanian D; Borges Pinto P; Grasso A; Vincent S; Tarayre H; Lajoignie D; Ghavi-Helm Y
    Nucleic Acids Res; 2024 Feb; 52(4):1702-1719. PubMed ID: 38084924
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries.
    Gong Y; Lazaris C; Sakellaropoulos T; Lozano A; Kambadur P; Ntziachristos P; Aifantis I; Tsirigos A
    Nat Commun; 2018 Feb; 9(1):542. PubMed ID: 29416042
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Chromatin topology and the timing of enhancer function at the
    Rodríguez-Carballo E; Lopez-Delisle L; Willemin A; Beccari L; Gitto S; Mascrez B; Duboule D
    Proc Natl Acad Sci U S A; 2020 Dec; 117(49):31231-31241. PubMed ID: 33229569
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
    Kang J; Kim YW; Park S; Kang Y; Kim A
    FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing.
    Li L; Lyu X; Hou C; Takenaka N; Nguyen HQ; Ong CT; Cubeñas-Potts C; Hu M; Lei EP; Bosco G; Qin ZS; Corces VG
    Mol Cell; 2015 Apr; 58(2):216-31. PubMed ID: 25818644
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The
    Rodríguez-Carballo E; Lopez-Delisle L; Zhan Y; Fabre PJ; Beccari L; El-Idrissi I; Huynh THN; Ozadam H; Dekker J; Duboule D
    Genes Dev; 2017 Nov; 31(22):2264-2281. PubMed ID: 29273679
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Visualizing the Role of Boundary Elements in Enhancer-Promoter Communication.
    Yokoshi M; Segawa K; Fukaya T
    Mol Cell; 2020 Apr; 78(2):224-235.e5. PubMed ID: 32109364
    [TBL] [Abstract][Full Text] [Related]  

  • 16. 3D genome evolution and reorganization in the Drosophila melanogaster species group.
    Torosin NS; Anand A; Golla TR; Cao W; Ellison CE
    PLoS Genet; 2020 Dec; 16(12):e1009229. PubMed ID: 33284803
    [TBL] [Abstract][Full Text] [Related]  

  • 17. InTAD: chromosome conformation guided analysis of enhancer target genes.
    Okonechnikov K; Erkek S; Korbel JO; Pfister SM; Chavez L
    BMC Bioinformatics; 2019 Jan; 20(1):60. PubMed ID: 30704404
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
    Cubeñas-Potts C; Rowley MJ; Lyu X; Li G; Lei EP; Corces VG
    Nucleic Acids Res; 2017 Feb; 45(4):1714-1730. PubMed ID: 27899590
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A complex regulatory landscape involved in the development of mammalian external genitals.
    Amândio AR; Lopez-Delisle L; Bolt CC; Mascrez B; Duboule D
    Elife; 2020 Apr; 9():. PubMed ID: 32301703
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Nonlinear control of transcription through enhancer-promoter interactions.
    Zuin J; Roth G; Zhan Y; Cramard J; Redolfi J; Piskadlo E; Mach P; Kryzhanovska M; Tihanyi G; Kohler H; Eder M; Leemans C; van Steensel B; Meister P; Smallwood S; Giorgetti L
    Nature; 2022 Apr; 604(7906):571-577. PubMed ID: 35418676
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.