BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 38242438)

  • 1. A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome.
    Cao X; Sun S; Xing J
    Mol Cell Proteomics; 2024 Feb; 23(2):100719. PubMed ID: 38242438
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.
    McGowan T; Johnson JE; Kumar P; Sajulga R; Mehta S; Jagtap PD; Griffin TJ
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32236523
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Proteogenomic Gene Structure Validation in the Pineapple Genome.
    Ariffin N; Newman DW; Nelson MG; O'cualain R; Hubbard SJ
    J Proteome Res; 2024 May; 23(5):1583-1592. PubMed ID: 38651221
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Integrative Proteogenomics Using ProteomeGenerator2.
    Kwok N; Aretz Z; Takao S; Ser Z; Cifani P; Kentsis A
    J Proteome Res; 2023 Aug; 22(8):2750-2764. PubMed ID: 37418425
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multi-tissue proteogenomic analysis for mechanistic toxicology studies in non-model species.
    Lin MS; Varunjikar MS; Lie KK; Søfteland L; Dellafiora L; Ørnsrud R; Sanden M; Berntssen MHG; Dorne JLCM; Bafna V; Rasinger JD
    Environ Int; 2023 Dec; 182():108309. PubMed ID: 37980879
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations.
    Wen B; Wang X; Zhang B
    Genome Res; 2019 Mar; 29(3):485-493. PubMed ID: 30610011
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells.
    Madugundu AK; Na CH; Nirujogi RS; Renuse S; Kim KP; Burns KH; Wilks C; Langmead B; Ellis SE; Collado-Torres L; Halushka MK; Kim MS; Pandey A
    Proteomics; 2019 Aug; 19(15):e1800315. PubMed ID: 30983154
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat Proteoforms.
    Santos LGC; Parreira VDSC; da Silva EMG; Santos MDM; Fernandes ADF; Neves-Ferreira AGDC; Carvalho PC; Freitas FCP; Passetti F
    Int J Mol Sci; 2024 Jan; 25(2):. PubMed ID: 38256255
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Proteogenomic Analysis of Breast Cancer Transcriptomic and Proteomic Data, Using De Novo Transcript Assembly: Genome-Wide Identification of Novel Peptides and Clinical Implications.
    Hari PS; Balakrishnan L; Kotyada C; Everad John A; Tiwary S; Shah N; Sirdeshmukh R
    Mol Cell Proteomics; 2022 Apr; 21(4):100220. PubMed ID: 35227895
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani.
    Nirujogi RS; Pawar H; Renuse S; Kumar P; Chavan S; Sathe G; Sharma J; Khobragade S; Pande J; Modak B; Prasad TS; Harsha HC; Patole MS; Pandey A
    J Proteomics; 2014 Jan; 97():48-61. PubMed ID: 23665000
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CrypticProteinDB: an integrated database of proteome and immunopeptidome derived non-canonical cancer proteins.
    Othoum G; Maher CA
    NAR Cancer; 2023 Jun; 5(2):zcad024. PubMed ID: 37275273
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
    Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S
    J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome annotation of Anopheles gambiae using mass spectrometry-derived data.
    Kalume DE; Peri S; Reddy R; Zhong J; Okulate M; Kumar N; Pandey A
    BMC Genomics; 2005 Sep; 6():128. PubMed ID: 16171517
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Proteogenomic mapping of Mycoplasma hyopneumoniae virulent strain 232.
    Pendarvis K; Padula MP; Tacchi JL; Petersen AC; Djordjevic SP; Burgess SC; Minion FC
    BMC Genomics; 2014 Jul; 15(1):576. PubMed ID: 25005615
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome Annotation of a Model Diatom Phaeodactylum tricornutum Using an Integrated Proteogenomic Pipeline.
    Yang M; Lin X; Liu X; Zhang J; Ge F
    Mol Plant; 2018 Oct; 11(10):1292-1307. PubMed ID: 30176371
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation.
    Kumar D; Yadav AK; Jia X; Mulvenna J; Dash D
    Mol Cell Proteomics; 2016 Jan; 15(1):329-39. PubMed ID: 26560066
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TEx-MST: tissue expression profiles of MANE select transcripts.
    Tung KF; Lin WC
    Database (Oxford); 2022 Sep; 2022():. PubMed ID: 36170113
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry.
    Prasad TS; Harsha HC; Keerthikumar S; Sekhar NR; Selvan LD; Kumar P; Pinto SM; Muthusamy B; Subbannayya Y; Renuse S; Chaerkady R; Mathur PP; Ravikumar R; Pandey A
    J Proteome Res; 2012 Jan; 11(1):247-60. PubMed ID: 22129275
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
    Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
    Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome.
    Lobas AA; Karpov DS; Kopylov AT; Solovyeva EM; Ivanov MV; Ilina IY; Lazarev VN; Kuznetsova KG; Ilgisonis EV; Zgoda VG; Gorshkov MV; Moshkovskii SA
    Proteomics; 2016 Jul; 16(14):1980-91. PubMed ID: 27233776
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.